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Report for CCDS29772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29772.1 Public Mus musculus 19 Pcgf5 23 108 98 CCDS HistoryNCBI Gene:76073Re-query CCDS DB by CCDS ID:29772.1Re-query CCDS DB by GeneID:76073See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062389.5 ENSMUSP00000058730.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062389.5Link to Ensembl Protein Viewer:ENSMUSP00000058730.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062389Re-query CCDS DB by Protein ID:ENSMUSP00000058730
Original member Current member EBI ENSMUST00000071267.13 ENSMUSP00000071245.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071267.13Link to Ensembl Protein Viewer:ENSMUSP00000071245.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071267Re-query CCDS DB by Protein ID:ENSMUSP00000071245
Original member Current member EBI ENSMUST00000225920.1 ENSMUSP00000153206.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225920.1Link to Ensembl Protein Viewer:ENSMUSP00000153206.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225920Re-query CCDS DB by Protein ID:ENSMUSP00000153206
Original member Current member NCBI NM_001368692.1 NP_001355621.1 Accepted alive Link to Nucleotide Sequence:NM_001368692.1Link to Protein Sequence:NP_001355621.1Re-query CCDS DB by Nucleotide ID:NM_001368692Re-query CCDS DB by Protein ID:NP_001355621Link to BLAST:NP_001355621.1
Original member Current member NCBI NM_001368693.1 NP_001355622.1 Accepted alive Link to Nucleotide Sequence:NM_001368693.1Link to Protein Sequence:NP_001355622.1Re-query CCDS DB by Nucleotide ID:NM_001368693Re-query CCDS DB by Protein ID:NP_001355622Link to BLAST:NP_001355622.1
Original member Current member NCBI NM_029508.4 NP_083784.1 Accepted alive Link to Nucleotide Sequence:NM_029508.4Link to Protein Sequence:NP_083784.1Re-query CCDS DB by Nucleotide ID:NM_029508Re-query CCDS DB by Protein ID:NP_083784Link to BLAST:NP_083784.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355621.1 236 Q3UK78-2 236 100% 0 0
NP_001355622.1 236 Q3UK78-2 236 100% 0 0
NP_083784.1 236 Q3UK78-2 236 100% 0 0

Chromosomal Locations for CCDS 29772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36412125 36412236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36434570 36434666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36437155 36437210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36437303 36437362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36439999 36440147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36442844 36442942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36444988 36445077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36455621 36455668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCTACCCAAAGGAAACACTTGGTGAAAGACTTCAACCCTTACATCACCTGCTACATCTGTAAAGGCT
ATCTGATCAAGCCCACGACAGTGACGGAATGCCTCCATACATTCTGTAAGACCTGTATTGTCCAGCACTT
TGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAGG
CTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAACAAGAACTTCAGCGTG
AGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAGATGATATTTCGAAGGTTGACAAGTC
TAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCT
ATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAGGGTCTCATGAAGAAAT
TTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCC
AAGTTCTTATGAGTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATC
TATATGACAAGATGGCGACTAAGAGGAGAAAATTCATACCCGATGGTATTGCAGTATCGACCGAGAATTG
ATTTTGGGTAG

Translation (236 aa):
MATQRKHLVKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEMLR
LDNTLEEIIFKLVPGLREQELQRELEFWKKNKPQENGQDDISKVDKSKADEEGDENQDDKDYHRSDPQIA
ICLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIKKFLSLKLKLPSSYELDVLCNGEIMGKDHTMEFI
YMTRWRLRGENSYPMVLQYRPRIDFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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