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Report for CCDS17080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17080.1 Public Mus musculus 2 Ocstamp 23 108 98 CCDS HistoryNCBI Gene:74614Re-query CCDS DB by CCDS ID:17080.1Re-query CCDS DB by GeneID:74614See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029213.4 ENSMUSP00000029213.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029213.4Link to Ensembl Protein Viewer:ENSMUSP00000029213.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029213Re-query CCDS DB by Protein ID:ENSMUSP00000029213
Original member Current member NCBI NM_029021.1 NP_083297.1 Accepted alive Link to Nucleotide Sequence:NM_029021.1Link to Protein Sequence:NP_083297.1Re-query CCDS DB by Nucleotide ID:NM_029021Re-query CCDS DB by Protein ID:NP_083297Link to BLAST:NP_083297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083297.1 498 Q9D611 498 100% 0 0

Chromosomal Locations for CCDS 17080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165395846 165396298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165397221 165398220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165400288 165400331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGAGGACCATCAGGGCAGCCACGGAACACCTCTTTGGCTTGGGGTGGAAGTTCTGGCGCTTGGGGATCT
GCAAGGCAGTTGTTCCACTGCAGGCTGCCTGGAAAGCCTTCTCCCAGCCTGTCCCAGCCAGCTGTAACGA
ACTACTGACCCAGCTTCTCCTGTGTGTTTCCTTGGCCAGTCTTATCGCAGGCCTGGCGCATCACTGGCTG
GTCTCTTTGCAGCTTTATCCTTTGGGACCCCCTGCCCTGGTGACCTCTCTCTGTGGTCTCTTCGTCTTCC
TAAGCCTGGGCCTGGTGCCCCCCATCCGCTGCCTATTTGTGCTCAGTGTGCCAACCCTGGGCTCCAAGCA
GGGCCGCCGCTTGCTCCTGTCCTACAGTGCAGCCAACCTGGCTGTCGCTGTGGTGCCAAACGTCTTAGGC
AATGTGCGTGCAGCTGGGCAAGTGCTGAGCTGTGTTACTGAGGGCTCTTTGGAGAGTCTGCTTAATACCA
CTTACCAGCTGCGCCAGGCAGCCAGGGAACTGGGCCCAGCCAGCCGAGCAGGCAGCCGCAGCCTGACATT
TGAGGTCGAGGGCAAGGGCTCAGCCTTCCGCCTTCACATGCACACGATCACTCAGGAGATCCTGGAAGAC
TTCTCTGGCCTGGAGTTCCTGGCTCGAGCAGCACTGGGCACTCAGCGGGTGGTCACCGGGTTGTTCCTGC
TGGGCCTCCTGGGAGAGTCGGCCTGGTACCTTCATCGCTACCTCACTGACCTGCGTTTCGACAATATCTA
CGCGACTCGGCAGCTGGTTCGGCAGCTGGCCCAGGCTGGTGCCACACATCTGCTGACCTCTCCGCCTCCG
TGGCTGCTCCAAACAGCCCAGCCTAAGTTGTCACGGGAGGAGCTGCTGAGCTGTCTCCTAAGGCTGGGGC
TACTGGCATTGCTCTTAGTAGCCACAGCTGTGACAGTGGCCTCAGACTATGGGGCCTTCCTCTTGGCACA
AGCAGCTGTAGCCTGGGCTCAGAAGTTACCCACTGTCCCAATCACACTCACAGTCAAATATGACGCCTCA
TATAAGGTTCTGGACTTCATCCTCTTCGTCCTCAACCAACCTCCGGTGGAGAGCGTGTTTGCCTCCATGC
AGCGCTCCTTCCAGTGGGAGCTGCGCTTCACGCCCCACGACTGTCATCTACCACAGGCTCAACCACCCCG
TGTCACCGCTGCTCTGGCGGCGGGCGCCCTGCAACTGCTGGCGGGCGCCACCTTGGTGCTACAGGCCTAC
GCCTGGCGCCTGCGCCACACCATCGCAGCCTCCTTCTTCCCAGACCAGGAGGCCAGGAGGCTTAGCCACT
TGCAGGCCCGGCTCCAGAGGAGACACAACCAGAGTGACCACCTGAACAAACAGCCCGGCACTATGGCCAC
CCGGGAATCCAGGAAGCCTGGACAGGGAACTCGGACTCTGGAGTCACAGGGACCTCAGGCACATGACTCC
CTTGGGCCTCCATATGACCTCGAGTAG

Translation (498 aa):
MRTIRAATEHLFGLGWKFWRLGICKAVVPLQAAWKAFSQPVPASCNELLTQLLLCVSLASLIAGLAHHWL
VSLQLYPLGPPALVTSLCGLFVFLSLGLVPPIRCLFVLSVPTLGSKQGRRLLLSYSAANLAVAVVPNVLG
NVRAAGQVLSCVTEGSLESLLNTTYQLRQAARELGPASRAGSRSLTFEVEGKGSAFRLHMHTITQEILED
FSGLEFLARAALGTQRVVTGLFLLGLLGESAWYLHRYLTDLRFDNIYATRQLVRQLAQAGATHLLTSPPP
WLLQTAQPKLSREELLSCLLRLGLLALLLVATAVTVASDYGAFLLAQAAVAWAQKLPTVPITLTVKYDAS
YKVLDFILFVLNQPPVESVFASMQRSFQWELRFTPHDCHLPQAQPPRVTAALAAGALQLLAGATLVLQAY
AWRLRHTIAASFFPDQEARRLSHLQARLQRRHNQSDHLNKQPGTMATRESRKPGQGTRTLESQGPQAHDS
LGPPYDLE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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