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Report for CCDS18242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18242.1 Public Mus musculus 4 Hdhd3 23 108 98 CCDS HistoryNCBI Gene:72748Re-query CCDS DB by CCDS ID:18242.1Re-query CCDS DB by GeneID:72748See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037820.2 ENSMUSP00000036337.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037820.2Link to Ensembl Protein Viewer:ENSMUSP00000036337.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037820Re-query CCDS DB by Protein ID:ENSMUSP00000036337
Original member Current member NCBI NM_024257.1 NP_077219.1 Accepted alive Link to Nucleotide Sequence:NM_024257.1Link to Protein Sequence:NP_077219.1Re-query CCDS DB by Nucleotide ID:NM_024257Re-query CCDS DB by Protein ID:NP_077219Link to BLAST:NP_077219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077219.1 251 Q9CYW4 251 100% 0 0

Chromosomal Locations for CCDS 18242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62499182 62499937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGCACACCGGCTGCAGATGCGTCTGCTGACGTGGGATGTAAAGGATACTCTGATCAAGCTCCGCCGAC
CCGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGAAGACATAACCGTGGAACA
AGCCTTCAGGCAGGCATACCGGGCTCAGAGCCACAACTTCCCCAACTATGGCCTGAGCCGTGGCCTTACT
TCCCGTCAATGGTGGAAGGACGTGGTCCTACACACCTTCCGCCTAGCAGGGGTCCCAGATGCCCAGGCCA
TGACTCCAGTTGCTGACCAGCTATACGAAGACTTCAGCAGCCCTTTCACCTGGCAGGTGTTGGAGGGGGC
TGAGATGACCCTGAAGGGGTGCCGTAAGCGGGGTCTGAAGCTGGCAGTGGTCTCCAACTTTGACCGACGA
CTAGAGGATATCCTAACAGGCCTTGGCCTGCGAGAACATTTTGATTTTGTTTTGACTTCTGAGGCTGTGG
GCTGTCCTAAACCCGACCCACGGATTTTCCGTGAGGCTCTGCAGCGCGCTTGTGTAGAACCTGCAGTGGC
GGCCCACGTGGGGGATAGTTACCTCTGTGATTACCAGGGGTCTCAGGCTGTGGGCATGCACAGCTTCCTG
GTAGCGGGCTCAGAGCCTCTGGACTCTGCAGTCAGAGATTCTGTACCTAAGGAACATATTCTACCCTCCC
TCTCCCATCTCCTGCCTGCCCTTGACCTTCTGGAGGCCTCAAGCCCTATGTCATGA

Translation (251 aa):
MAHRLQMRLLTWDVKDTLIKLRRPVGEEYASKARAHGVVVEDITVEQAFRQAYRAQSHNFPNYGLSRGLT
SRQWWKDVVLHTFRLAGVPDAQAMTPVADQLYEDFSSPFTWQVLEGAEMTLKGCRKRGLKLAVVSNFDRR
LEDILTGLGLREHFDFVLTSEAVGCPKPDPRIFREALQRACVEPAVAAHVGDSYLCDYQGSQAVGMHSFL
VAGSEPLDSAVRDSVPKEHILPSLSHLLPALDLLEASSPMS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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