NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92655.1 Public Homo sapiens 19 TPRX2 24 110 108 CCDS HistoryNCBI Gene:503627Re-query CCDS DB by CCDS ID:92655.1Re-query CCDS DB by GeneID:503627See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92655.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535362.3 ENSP00000514106.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535362.3Link to Ensembl Protein Viewer:ENSP00000514106.1Re-query CCDS DB by Nucleotide ID:ENST00000535362Re-query CCDS DB by Protein ID:ENSP00000514106
Original member Current member NCBI NM_001397347.2 NP_001384276.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001397347.2Link to Protein Sequence:NP_001384276.1Re-query CCDS DB by Nucleotide ID:NM_001397347Re-query CCDS DB by Protein ID:NP_001384276Link to BLAST:NP_001384276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001384276.1 301 P0DV77 301 100% 0 0

Chromosomal Locations for CCDS 92655.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47859247 47859271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47860113 47860282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47860802 47861512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGCAAGACCCTGGTCATCTCCAAGGCCCTCCCCTGGCCCTGGACCCTCCAAGGAGACAGCGGCAGGAGC
GCACGGTCTACACTGAAAGCCAGCAGAAAGTGCTAGAATTTTACTTTCAGAAGGACCAGTACCCGAACTA
CGACCAGCGACTGAATCTGGCGGAGATGCTCAGCCTCAGGGAGCAACAGCTGCAGGTGTGGTTCAAGAAT
CGCCGCGCCAAACTAGCTCGGGAGCGGCGGCTCCAGCAGCAGCCCCAGCGCGTCCCTGGGCAGAGAGGCC
GAGGAGCCCGCGCTGCGCCCCTAGTCCCTGTAGCCGCTGCCTCCTTCCCTGGGGGTCCTGAGTTCCCGCA
GGGCAGGGGTTCCTGGATCTCCCCTCAGCCGGGCCCCTGGGGAGTCCTCCCAGCAGCAGAACCGAAGATC
TACAGCCTCCCCCGGACCTGGGGTGGCCCTGAGTGTGGAACACAGGAGGGCCTCAAGGCTGTCCCGGCTC
CAGGCCCTGGCCCAATCCCAGCCCCTATCCCAGGCCCAGCCCAGATCCCAGGCCCAGTCCCAGGCCCAGC
CCCGAATTTAGGCCCAATGTCAGGCCCACTGTCAGTCTCGATCCCCGGTCCAATACCAGCCCCCATCTCT
TGCCCAGGCCCAATCCCAGACCCAGTCCTAGGCCGAACCCTGATGCCAGGCCCAGGATCACTCCCAACCC
CAGCCCCAGGCGCCTTGTGGCCTCAGAGCCCCTATGCCTCCAACTTGTCGCCAGACACCCAGTTATACCC
TGACTTCACCAAGCTGCTCCCGCTCCTAGACCGGTTCGAGGAATCCTCACTCTCCACCACGACGTCTCAG
TACAAAGAGGAGGATGGCTTCGTGGACAAAAATCACTCAGTCCCCAGGTCATTACTGGATTTATAG

Translation (301 aa):
MQDPGHLQGPPLALDPPRRQRQERTVYTESQQKVLEFYFQKDQYPNYDQRLNLAEMLSLREQQLQVWFKN
RRAKLARERRLQQQPQRVPGQRGRGARAAPLVPVAAASFPGGPEFPQGRGSWISPQPGPWGVLPAAEPKI
YSLPRTWGGPECGTQEGLKAVPAPGPGPIPAPIPGPAQIPGPVPGPAPNLGPMSGPLSVSIPGPIPAPIS
CPGPIPDPVLGRTLMPGPGSLPTPAPGALWPQSPYASNLSPDTQLYPDFTKLLPLLDRFEESSLSTTTSQ
YKEEDGFVDKNHSVPRSLLDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH