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Report for CCDS39751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39751.1 Public Mus musculus 7 Zfp583 23 108 98 CCDS HistoryNCBI Gene:213011Re-query CCDS DB by CCDS ID:39751.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39751.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062765.13 ENSMUSP00000053935.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062765.13Link to Ensembl Protein Viewer:ENSMUSP00000053935.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062765Re-query CCDS DB by Protein ID:ENSMUSP00000053935
Original member Current member EBI ENSMUST00000108560.7 ENSMUSP00000104200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108560.7Link to Ensembl Protein Viewer:ENSMUSP00000104200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108560Re-query CCDS DB by Protein ID:ENSMUSP00000104200
Original member Current member EBI ENSMUST00000165705.7 ENSMUSP00000129551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165705.7Link to Ensembl Protein Viewer:ENSMUSP00000129551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165705Re-query CCDS DB by Protein ID:ENSMUSP00000129551
Original member Current member NCBI NM_001033249.3 NP_001028421.1 Accepted alive Link to Nucleotide Sequence:NM_001033249.3Link to Protein Sequence:NP_001028421.1Re-query CCDS DB by Nucleotide ID:NM_001033249Re-query CCDS DB by Protein ID:NP_001028421Link to BLAST:NP_001028421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028421.1 568 Q3V080 568 100% 0 0

Chromosomal Locations for CCDS 39751.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6316305 6317779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6323647 6323742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6325453 6325579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6329255 6329263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGTCCAAGAATTTGCTGACATTTGAGGATGTGTCTGTAAATTTCACTCAAGAGGAATGGCAGTGGCTGA
GTGACACACAGAGAGATTTGTACAGGAAGGTGACATTGGAGAACTATAAGAGCCTGGTGTCACTGGGAAT
TCCTGTTTACAAACCAGCCGTGATCTCATTACTGGAACAAGGGAAAGACCCCTGGATGGTGCAGAAGAAG
GGAGCAAGAGACACATGTCCTGATTGGCAGTATGTATTCAAAGGCACAGAATTTATATCAAAGCAAGATA
TTTATAAAGAATCTGCCAAAGTTCTAACAATGGGAAGAAGCCATTTTAGTTCCAGCCTTGACTGTCCCGA
TTTGAAAGAAGACCATGAAAATGAAGACTGGTTCAAAAACAGGTTGGGACGTCAGGAGGTGCATTCCCAT
CAATTGTTCATCACTCATAAAGAAGTCCCTGAAAGTGAAATTAGGGGGTGCAATCCATCTTGTCAAGCCG
TCCATCAGAATGCAATACTAGATGTGCCACAATGTTCCTCTACCAAAGAAAGAATAGATCAGAGTGAGCC
ACAAAAGAGAAGTTACCGGAAAAAGTCTGTTGAAATGAAGCATAAGAAGGTCCAGGTAGAAAAGAGAATC
CTGAAGTGTAGTGAATGTGAAAAAGTCTTTAACCAGACCTCATCCCTTACACTCCATCAGAGAATTCATA
CCGGAGAGAAACCCTACGCATGCGTCGAATGTGGGAAAGCCTTCAGCCAAAGCGCAAACCTAGCACAACA
TAAGAGAATACACACTGGGGAGAAGCCTTATGAATGTAAAGAGTGTAGGAAGGCCTTCAGCCAGAATGCA
CATCTTGCTCAGCATCAGAGAGTTCATACTGGAGAGAAACCTTACCAATGTAAAGAATGTAAAAAAGCCT
TTAGCCAGATTGCACACCTGACTCAGCATCAAAGAATTCATACCGGAGAGCGACCTTTTGAATGTATTGA
ATGTGGAAAAGCATTTAGTAACGGTTCATTCCTGGCCCAGCATCAGAGAATCCATACGGGTGAGAAACCG
TATGTGTGCCATGTGTGTGGGAAAGCTTTTAGTCACCGTGGATACCTAATTGTACATCAGAGAATTCATA
CTGGGGAGAGACCCTATGAATGTAAAGAATGTAGGAAGTCTTTCAGCCAGTATGCACACCTTTCTCAACA
TCAGAGAGTGCATACTGGAGAGAAACCGTATGAATGTAAAGTATGTAGGAAAGCGTTCAGCCAGGTTGCT
TACCTTGATCAACATCAGAGGGTTCATACCGGAGAGAAACCCTATGAGTGTGCTGAATGTAGAAAGGCCT
TCAGCAACAGTTCATCGCTTGCACAGCATCAGAGAAGTCACACAGGAGAGAAACCCTATATATGCAAGGA
ATGTAGGAAAACATTTAGCCAAAATGCAGGCCTTGCTCAACATCAAAGAATCCATACTGGAGAGAAACCT
TACGAATGTAATATTTGTGGGAAAGCCTTTAGTTATAGTGGATCTCTTACCCTACATCAGAGAATTCATA
CCGGAGAGAGACCTTATGAATGTAAAGATTGCAGGAAATCGTTCAGGCAGCGTGCACATCTTGCTCATCA
TGAGAAAGTCCATACTATGGAGTCATTCTTGTCCCTTTCCTCTCCATCACCCTCTATGTCAAGTCAGTTG
CCAAGAACTCTAGGCTTAATCTCTTAA

Translation (568 aa):
MSKNLLTFEDVSVNFTQEEWQWLSDTQRDLYRKVTLENYKSLVSLGIPVYKPAVISLLEQGKDPWMVQKK
GARDTCPDWQYVFKGTEFISKQDIYKESAKVLTMGRSHFSSSLDCPDLKEDHENEDWFKNRLGRQEVHSH
QLFITHKEVPESEIRGCNPSCQAVHQNAILDVPQCSSTKERIDQSEPQKRSYRKKSVEMKHKKVQVEKRI
LKCSECEKVFNQTSSLTLHQRIHTGEKPYACVECGKAFSQSANLAQHKRIHTGEKPYECKECRKAFSQNA
HLAQHQRVHTGEKPYQCKECKKAFSQIAHLTQHQRIHTGERPFECIECGKAFSNGSFLAQHQRIHTGEKP
YVCHVCGKAFSHRGYLIVHQRIHTGERPYECKECRKSFSQYAHLSQHQRVHTGEKPYECKVCRKAFSQVA
YLDQHQRVHTGEKPYECAECRKAFSNSSSLAQHQRSHTGEKPYICKECRKTFSQNAGLAQHQRIHTGEKP
YECNICGKAFSYSGSLTLHQRIHTGERPYECKDCRKSFRQRAHLAHHEKVHTMESFLSLSSPSPSMSSQL
PRTLGLIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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