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Report for CCDS37345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37345.1 Public Mus musculus 16 Spice1 23 108 98 CCDS HistoryNCBI Gene:212514Re-query CCDS DB by CCDS ID:37345.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050897.6 ENSMUSP00000058832.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050897.6Link to Ensembl Protein Viewer:ENSMUSP00000058832.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050897Re-query CCDS DB by Protein ID:ENSMUSP00000058832
Original member NCBI NM_144550.4 NP_653133.3 Updated not alive Link to Nucleotide Sequence:NM_144550.4Link to Protein Sequence:NP_653133.3Re-query CCDS DB by Nucleotide ID:NM_144550Re-query CCDS DB by Protein ID:NP_653133
Current member NCBI NM_144550.5 NP_653133.3 Accepted alive Link to Nucleotide Sequence:NM_144550.5Link to Protein Sequence:NP_653133.3Re-query CCDS DB by Nucleotide ID:NM_144550Re-query CCDS DB by Protein ID:NP_653133Link to BLAST:NP_653133.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653133.3 860 Q8C804 860 100% 0 0

Chromosomal Locations for CCDS 37345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44355440 44355535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44356145 44356192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44357760 44357903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44365584 44365686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44366533 44366639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44367633 44367748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44369880 44370019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44370238 44370378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44370680 44370945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44372534 44372665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44375642 44375792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44376798 44377022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44378856 44379340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44382019 44382202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44384671 44384773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44385619 44385706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44386786 44386839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGTCATTGATCAGAGTGAACCGCTTTGGTCCCCGGGGAGGTGGAAGAAAAACTCTGAAAGTAAAGAAGA
AAGCTGCAGTGAGGCAAGAATGGGATAATACTGTGAATGATCTAACAGTTCACCGGGCAACTCCTGAAGA
TCTAGTGCGCCGTCATGAGATGCACAAGTCAAAGAATAGAGCATTGGTGCACTGGGAACTTCAAGAAAAA
GCTTTGAAGAGAAAATGGAAGAAGCAGAAACCAGAAACTTCAAGTCTTGAAAAAAGAAAGTTATCTATCA
TGAAGGAGATTCTCTCTGATCAATACCTGACACAGGATGTGCTGGAAAAGTCCGATCATCTGATGGCTGC
AGCCAAAGGTCTGTTTGCTGATGTTCCTCGTAAGCGCACAGGGTTTCCAAATGTAACAAGGGCTCCAGAT
TCCTCACAGAGCCACACTGGAATAAATCAAGACCCTGTCACCCAGTCTATCCTTAATGAATCAATCATAG
AGCCTCAGGCTCTTAATGAAGTCGACGATGCAGGGGAGCAGAGCACTGCTCACAGCCAGTCAGAAGACAG
CGAGAATGAATTGCCTAACTCCCTCAGCCAGCATTCTAACAGGAGTACAGAGAGGTTTCTTCACCAACTA
AAGGAAGAGAATTCCGAGTTAATCAATCAACTGTGGACTGATATTCAGCAGAAAATCGCTACCCAGTCAC
AAAGAACTCCTCCAGGATCTCCGTCCTCGGAGCTTTCAGCCGAGGATCAGAAAGCTGCTCTGAATGCAAC
GGATGCTGTCAAGAGAATCCAGGCTGGGCCTCAGCCTGAGGAGGCTGCTGAGCCTGTAGACTTCAGCTCC
AGCTACCTGGGACAGGTGCTAAACACAAGGAAGCAAAAGCCGCTGCTAGCTAAAGTGAAAAGAAAACAAG
ATATGCATGCTGCCTCCAAGCAGAAGACAAACATGCTGTCCTCCAGCACAGCCTCTGCAGACAGACCCAG
TAGCACTGGCTCCAGCCTGGACGTTCTCAAACACGTGATCCATGAAGTGGAGCACGAGATGGAAGAGTAT
GAGCGGTGCACAGGGCGTGAGGTCACGGGGCTGCAGGGTGGTCAGGGACTCACAGGCTTCACCCTGTCCC
TGGTGAGCTCTCTCTGCCGCCTGGTTCGGTACCTTAAAGAGAGTGAAATCCAACTTCGGAAAGAAGTAGA
GACAAGGCAGCAGCTGGAACAGATGTTAGGTGATCACCGAGAGCTCATTGATGCCCTGACAGCTGAAATC
CTCTCCCTCAGAGAAGAGAATAGTACCATGCAGGCGAGACTTCAGCAGTACATGGTTACCACAGATGAGC
AGCTCATATCGCTCACACATGCCATTAAGAACTGTCCTGTGATAAATAACTCCAGACAAGAAAGTCAAGC
ACCAGAAAGGGCAGCTATGGGTAGAAGACTTGTGGATAATGTAGAGGGTCCTGTTATAAGCAGTAATGGC
TCCATGCCATTGATGTTCAGAGGGGAAGAAGTGGTTGAATTCCCACAGGAAGAGTTGCCTGTTAAACTAT
CTCAGGGGCCAACCCCCACAGAAAACTTGAATCTGGCCAATAATTTCCCAACCCATATTTTCGAGCCAGC
TGTGATGCTAACACCACCCAGGCAGAAGAGCAACTCAGAATTCTCTCCTCTCCAGGATGTTCTGAGGAGG
ACTGTTCAGACTCGTCCGGCCCCACGAATTCCCCCCACTGTGGAAGTTATAGAGAAGGAGCAGAACTGGG
AAAAGAAGGCCCTGCCTATTGATCCAGACATTCAGAACTCAAGTGAGGAAAACCGTCTCTTCACTCAGAG
GTGGAGAGTCTCGCACATGGGAGAAGACCTGGAGAACAAAGGGCAGCCAGCATTTGTTAGCCTGTCACAG
CCGCCTTGTAGTTCCCTTCCCAGCACTCAGCAGCCAAGAAACCCCGTGTTGTCAGAGGAGCCCACTGTGC
TTGGAGATGGGCAGCAGCTCAGAACATCGGAGGCCCTGGTGCAGAGGAAGGACATTATGGCCCGGATCGC
CGAGCTCACACTGCAGAATTCAGCCATCAAGGCCCACCTGAACAATATTACCAGCTCAGGGGGAGAGCAA
GGTGATGGACTGCGGGAGCCACGCAAACAGGGAAGTGCCAGTGAAGTGTCTACTAATTTCCCAGCAGTTC
AGTCTTTAACGCCAAGTAGCATGGAGGAGCGGATTGCAGAGTTGAACCGACAGAGCATGGAGGCGCGCAG
CAAACTGCTCCAGCTGATAGAGCAGCAGAAACTTGTGGGCTTGAACCTTTCCTCATCACCGGTGTCACCC
GTGGAGTCACCTCTCAGAGCGTGGGCCGAAGAAGGAAAGCGAACCATCGAGGTGTCTGTTCCAGGAATGG
AGGCTTCAGAGAGTTCAAAATGCAATACTGTGTCTCCTGTCAGTGGGAACAGTTCAAGAAGATCGTCAGG
GGCGATCAGCAATTCTTGTTCTCCACTAAACGCCACCTCAGGAAGTGGGAAGTTCACACCAGTTAATCCA
AGAACAAAGACTGAAAAAAAAAATGAAGAAGGTTGGTTTGCTCTCTCTGCCCACATACCGTAA

Translation (860 aa):
MSLIRVNRFGPRGGGRKTLKVKKKAAVRQEWDNTVNDLTVHRATPEDLVRRHEMHKSKNRALVHWELQEK
ALKRKWKKQKPETSSLEKRKLSIMKEILSDQYLTQDVLEKSDHLMAAAKGLFADVPRKRTGFPNVTRAPD
SSQSHTGINQDPVTQSILNESIIEPQALNEVDDAGEQSTAHSQSEDSENELPNSLSQHSNRSTERFLHQL
KEENSELINQLWTDIQQKIATQSQRTPPGSPSSELSAEDQKAALNATDAVKRIQAGPQPEEAAEPVDFSS
SYLGQVLNTRKQKPLLAKVKRKQDMHAASKQKTNMLSSSTASADRPSSTGSSLDVLKHVIHEVEHEMEEY
ERCTGREVTGLQGGQGLTGFTLSLVSSLCRLVRYLKESEIQLRKEVETRQQLEQMLGDHRELIDALTAEI
LSLREENSTMQARLQQYMVTTDEQLISLTHAIKNCPVINNSRQESQAPERAAMGRRLVDNVEGPVISSNG
SMPLMFRGEEVVEFPQEELPVKLSQGPTPTENLNLANNFPTHIFEPAVMLTPPRQKSNSEFSPLQDVLRR
TVQTRPAPRIPPTVEVIEKEQNWEKKALPIDPDIQNSSEENRLFTQRWRVSHMGEDLENKGQPAFVSLSQ
PPCSSLPSTQQPRNPVLSEEPTVLGDGQQLRTSEALVQRKDIMARIAELTLQNSAIKAHLNNITSSGGEQ
GDGLREPRKQGSASEVSTNFPAVQSLTPSSMEERIAELNRQSMEARSKLLQLIEQQKLVGLNLSSSPVSP
VESPLRAWAEEGKRTIEVSVPGMEASESSKCNTVSPVSGNSSRRSSGAISNSCSPLNATSGSGKFTPVNP
RTKTEKKNEEGWFALSAHIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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