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Report for CCDS49172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49172.1 Public Mus musculus 12 Wdr25 23 108 98 CCDS HistoryNCBI Gene:212198Re-query CCDS DB by CCDS ID:49172.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047115.8 ENSMUSP00000035553.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047115.8Link to Ensembl Protein Viewer:ENSMUSP00000035553.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047115Re-query CCDS DB by Protein ID:ENSMUSP00000035553
Original member Current member EBI ENSMUST00000167816.7 ENSMUSP00000129855.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167816.7Link to Ensembl Protein Viewer:ENSMUSP00000129855.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167816Re-query CCDS DB by Protein ID:ENSMUSP00000129855
Original member Current member NCBI NM_177602.3 NP_808270.2 Accepted alive Link to Nucleotide Sequence:NM_177602.3Link to Protein Sequence:NP_808270.2Re-query CCDS DB by Nucleotide ID:NM_177602Re-query CCDS DB by Protein ID:NP_808270Link to BLAST:NP_808270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808270.2 535 E9Q349-1 535 100% 0 0

Chromosomal Locations for CCDS 49172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108897931 108898725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108980691 108980838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108992807 108992937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109024963 109025133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109026410 109026550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109027246 109027467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCCTCGCTGGTGGCATATGATGATTCTGACTCCGAGACCGAGGCTGACCCTGCCAGAAGTGGGGACG
CTGCAGGTCAGATAAGTGACGCCTCTGGTATGAGCAGGCCGTCTGGGATGGGGTTTGCATCTAGCACAGT
GGGCGTGACCAAAGAGGGGGCACAGCACACAGGGAACTCTCCTAATGAAGACCCAGGGATGCAACGTCTG
CCGCTGGCTCGGCTCTGGAGAAGTGACCCTGGGTCTTGTCCCAGCCAGAGGCTACAGTGGCCCTCAAAGG
AACCTGATACCACTTTCCCTCCCAGTGAGCCTCCTCGTCCTTCTCTGTGGATGAGCCGGGCTCCAGTCGG
CCACGTGCCCCTAGCAGCTGCCTGTCTTAAGCCACTAAAACCTGCCTGGGACGTCCTCAAACCTTCTCAT
GATCAAAGCACATTTGAAAGCACAGCTGGAAATGCCAGCTCTTCTCAGAGGAAAAGGGGTGAGGACTGTG
TGCTTCCCTATATCCCCAAGAGGCTAAGGCAGCTGCAAGCGCTGAATCCAGAAGCAGGTGGGGGCAAAGA
TGGAGAGCCCCCGGGACCTCCTGCAGGGTGTGCCCCGGCCCCACTCTGTGTGGCTCCCACAGTGTCTGAG
TTCATCCAGCCATATTTGAACAGTCAGTACAGAGAGACTACGGTCCCCAAGAAAGTGCTTTTCCACCTTC
GAGGCCACAGGGGCCCGGTCAACAGCATTCAGTGGTGTCCAGTCTTTTGCAAGAGCCACATGCTTCTCTC
TGCTTCCATGGACAAAACCTTCAAGGTGTGGAATGCTGTGGACTCGGGACACTGCCTGCAGACCTACTCT
GTGCACAGTGAGGCAGTAAGGGCTGCACGGTGGTCTCCCTGTGGCCGGCGCATCCTCAGTGGTGGCTTCG
ACTTTGCCCTGCACCTAACAGACCTTGAAACAGGAACCCAAGTGTTTAGTGGTCAGAGTGACTTCAGAGT
CACCACCTTGAAATTTCATCCAAAAGACCACAACGTCTTTTTATGTGGCGGCTTCAGCTCTGAAATCAAA
GCTTGGGACATGAGGACTGGCAAGGTGGTGAAAGGCTACAAGGCCACCATCCAGCAGACCCTGGACATTC
TCTTCCTCCAGGAGGGCTCCGAGTTTCTTAGCAGTACGGACGCATCCACCCGGGACTCTGCTGACCGAAC
CATTATCGCCTGGGATTTCCGGACCGCTGCCAAGATCTCCAACCAGATCTTCCATGAGAGGTACACCTGT
CCCAGCCTCGCCTTGCATCCAAGGGAGCCTGTGTTCCTTGCACAAACCAATGGCAACTACCTGGCTCTCT
TTTCCTCTGTGTGGCCCTATCGGATGAGCAGACGGAGACGCTACGAAGGTCACAAGGTGGAAGGCTACGC
GGTGGGCTGTGAGTGTTCCCCATGTGGTGACCTGCTGGTGACAGGCAGCGCTGATGGCCGGGTTTTGATG
TTCAGTTTCCGCACGGCCAGCCGAGCGTGCACACTACAAGGGCACACGCAGGCCTGCCTTGGCACCACCT
ACCATCCTGTGCTGCCTTCTGTCCTCGGGACCTGCTCCTGGGGAGGAGACATCAAGATCTGGCACTAA

Translation (535 aa):
MASLVAYDDSDSETEADPARSGDAAGQISDASGMSRPSGMGFASSTVGVTKEGAQHTGNSPNEDPGMQRL
PLARLWRSDPGSCPSQRLQWPSKEPDTTFPPSEPPRPSLWMSRAPVGHVPLAAACLKPLKPAWDVLKPSH
DQSTFESTAGNASSSQRKRGEDCVLPYIPKRLRQLQALNPEAGGGKDGEPPGPPAGCAPAPLCVAPTVSE
FIQPYLNSQYRETTVPKKVLFHLRGHRGPVNSIQWCPVFCKSHMLLSASMDKTFKVWNAVDSGHCLQTYS
VHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQVFSGQSDFRVTTLKFHPKDHNVFLCGGFSSEIK
AWDMRTGKVVKGYKATIQQTLDILFLQEGSEFLSSTDASTRDSADRTIIAWDFRTAAKISNQIFHERYTC
PSLALHPREPVFLAQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLM
FSFRTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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