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Report for CCDS29079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29079.1 Public Mus musculus 18 Dsg1c 23 108 98 CCDS HistoryNCBI Gene:211924Re-query CCDS DB by CCDS ID:29079.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054128.6 ENSMUSP00000054799.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054128.6Link to Ensembl Protein Viewer:ENSMUSP00000054799.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054128Re-query CCDS DB by Protein ID:ENSMUSP00000054799
Original member Current member NCBI NM_181680.2 NP_859008.1 Accepted alive Link to Nucleotide Sequence:NM_181680.2Link to Protein Sequence:NP_859008.1Re-query CCDS DB by Nucleotide ID:NM_181680Re-query CCDS DB by Protein ID:NP_859008Link to BLAST:NP_859008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859008.1 911 Q7TSF0-1 911 100% 0 0

Chromosomal Locations for CCDS 29079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 20247440 20247487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20264285 20264320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20264829 20264960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20266057 20266212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20267814 20267958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20270303 20270469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20271925 20272059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20272351 20272536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20274604 20274872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20275170 20275309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20276891 20277076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20279213 20279340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20279652 20279724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20281849 20282057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20283054 20283779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGGACTGGCACTCCTTCAGGATAGCTGCCCTGCTGCTCACTTCCCTGGTGGTGCTTGAAGTTAACAGTG
AATTTCAAATCCAGGTAAGAGATCATAACGCCAAAAATGGTACCATCAAGTGGCATTCCATCAGAAGGCA
GAAACGAGAATGGATCAAGTTTGCTGCAGCCTGTCGCGAAGGTGAAGACAACTCAAAGAGAAACCCAATT
GCCAAAATTCATTCAGACTGTGCTGCAAACCAACCAGTGACATACCGCATCTCGGGAGTGGGAATTGACC
AGCCACCTTATGGAATCTTCATTATTAACCAAAAAACTGGTGAAATCAATATAACATCCATTGTTGATCG
TGAAGTCACCCCCTTTTTCATTATCTATTGCCGAGCACTGAATGCACAAGGTCAAGACTTGGAGAATCCA
CTGGAGCTTAGAGTTAGAGTGATGGATATAAACGACAACCCTCCTGTGTTTTCAATGACTACATTTCTAG
GACAAATAGAAGAAAATTCTAATGCAAACACACTGGTAATGAAACTCAATGCTACCGATGCCGATGAGCC
AAATAACTTGAACTCAATGATAGCCTTCAAGATCATAAGACAGGAGCCTTCTGACTCACCAATGTTCACC
ATCAACAGGAAAACTGGAGAAATCAGAACAATGAATAACTTTCTAGACAGAGAGCAATATAGCCAGTATT
CCCTTGTGGTGAGAGGCTCAGACCGGGACGGTGGAGCAGACGGCATGTCTGCAGAGAGCGAGTGCAGCAT
CACCATCCTGGATGTCAATGACAACATCCCATACTTGGAGCAGTCATCTTATGACATCACAATTGAAGAA
AACACACTTCACTCCCAACTATTGCAGATCAGAGTCATTGATTTGGATGAAGAATTCTCAGACAACTGGA
AGGCAATCATTTTCTTTATCTCTGGAAATGAGGGAAATTGGTTTGAAATAGAAATGAATGAAAGAACAAA
TGTAGGAACTCTGAAGGTTGTCAAGCCCCTAGATTATGAAGCCGTGAAGAATCTACAGCTTTGTATTGGT
GTTCGAAATGTAGCTGAATTCCACCAGTCAATTATTTCTCAATATAGACTCACAGTAACTTTGATCACTG
TGACTGTGTTAAATGTTGTCAAGGGCTGTGTGTTCCAGCCAGGTTCAAAGACATTTATAGTAGACAGTAG
AATGGAAGCAAATCACACAGTGGGAGAGTTTTTAGCTACAGACTGTGAAACAGGTCAAGCTACAAACAAG
TTCAAAAATGTTAGATACAGATATGTAATGGGAAATAACCCAGAGAACCTGCTGGTTGTTGACTCAGGCA
TAATAACTTTAAGAAACAGAGTTACTATGGAACAATACGAAAGGCTTAATAAGAGATATGAAGGAACAGT
GCTATCAATACATGATTCCCTTCAGAGGACCTGCACAGGGACAATCATCATGGTACTTTGTGGCTTCTGG
ACAACTACTGAACATCCCACAACATCCACTGAGAAACCTGTGACTCTATCCATCACTCCAAACGTAGACA
ATGTTCACTTCGGTCCTGCAGGCATCGGGCTGCTCATCATGGGGTTCCTAGTCTTAGGATTGGTTCCATT
CCTGCTGATCTCCTGTGATTGTGGAGGGGCCCCTGGTGGTGGAGCTGGATTTGAACCTGTTCCAGAATGT
TCTGATGGAGCAATTCACACGTGGGCTGTAGAAGGGCCACAGCCTGGTGGGATAACCACCATCTGTGTGC
CACAAATGCCACCTGGTAATGCCAATGTTATAGAATATATTGACAACTCAGGAGTTTATACAAATGAATA
TTGTGGCAGAGAAATGCAAGATCTGGGAGGAGGAGAACGAACCACAGGATTTGAACTAATGGATGGAGTT
AAAACATCAGCTGCACCTGAGATATGCCAAGAATATTCAGGAACATTAAGAAGAAATTCAATGAGAGAAT
GTAGAGATGGGGGTCTCAACATGAATTTTATGGAAAGTTACTTCTGCCAGAAAGCCTATGCTTATGCGGA
TGAAGATGAAGGACGTCCATCCAATGACTGTTTGCTCATCTATGACATCGAAGGTGTGGGTTCCCCTGCA
GGCTCCGTGGGCTGTTGCAGTTTCATTGAAGATCTAGATGAGAGTTTCCTGGATACCTTGGGGCCCAAGT
TTAAGAAGTTGGCAGATATCAGCCTGGGAAAAGAAATAGACTCATACCCAGATCCTGATCCTTCTTGGCC
TCCTCAGAGCACTGAACCAATTTGCCCACAGCATATGGAGCAACTTGCTAGTGGACACCCAAGCATATCC
CCACATTTTGGCAAGACCACAGTAATTTCTGAGAATGCCTACCCCTCTGGCCCTGGAGTACAGCATCCTA
TGCTAATTCCTGATCCTCTGGGCTATGGTAATATCACTGTGAGGGAGTCCTATACTACCTCTGGCACTCT
GAAACCCTCTGTCCACTTTCATGATAACCAGCAAGCTTCAAATGTGGTGGTGACAGAGAGAGTGGTGGGC
CCCATCTCTGGTGCTGATTTGCATGGCATGTTAGAGATACCTGCCTTAAGAGATGGAACAAATGTTATAG
TGACAGAAAGGGTAATAGCACCAGGCTCAAGTTTACCCAATTCTCTAACCATTCCTAACCCTCGAGAGAC
CTCAAATGTAGTTGTGACAGAAAGAGTGATCCAACCAACCTCTGGCATGATAGGCAACCTGAGCATCCCC
CCCTGA

Translation (911 aa):
MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPI
AKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENP
LELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFT
INRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEE
NTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIG
VRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNK
FKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFW
TTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPEC
SDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGV
KTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPA
GSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSIS
PHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVG
PISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIP
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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