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Report for CCDS41188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41188.1 Public Mus musculus X Ptchd1 23 108 98 CCDS HistoryNCBI Gene:211612Re-query CCDS DB by CCDS ID:41188.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038665.5 ENSMUSP00000039443.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038665.5Link to Ensembl Protein Viewer:ENSMUSP00000039443.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038665Re-query CCDS DB by Protein ID:ENSMUSP00000039443
Original member Current member NCBI NM_001093750.1 NP_001087219.1 Accepted alive Link to Nucleotide Sequence:NM_001093750.1Link to Protein Sequence:NP_001087219.1Re-query CCDS DB by Nucleotide ID:NM_001093750Re-query CCDS DB by Protein ID:NP_001087219Link to BLAST:NP_001087219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087219.1 888 Q14B62-1 888 100% 0 0

Chromosomal Locations for CCDS 41188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155573541 155575195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155586371 155587031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155622960 155623310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGCTGCGGCAGGTTCTGCACAGGGGCTTGAGGACGTGTTTCTCCCGGCTTGGCCACTTCATTGCCAGTC
ACCCGGTCTTCTTTGCTTCGGCGCCGGTGCTCATCTCCATCCTGCTCGGCGCCAGCTTCAGCCGCTACCA
GGTCGAAGAGAGCGTGGAGCACCTGCTGGCGCCCCAGCACAGCCTAGCCAAGATCGAGCGCAACCTAGTC
AACAGCCTCTTCCCGGTCAACCGCTCCAAGCACCGGCTCTACTCGGACCTGCAGACCCCTGGGCGCTACG
GCCGGGTCATTGTCACCTCCTACCAGAAAGCCAACATGCTAGACCAACATCACACGGACCTGATCTTAAA
GTTGCATACTGCAGTGACCAAGATCCAGGTTCCAAGGCCTGGCTTTAACTATACATTTGCTCACATATGT
GTCCTGAATAATGATAAGACTTGCATTGTGGATGACATAGTACACGTCCTGGAAGAGCTAAAGAATGCTC
GGGCCACCAATCGGACCAATTTTGCTATCACATATCCGATCACTCACTTAAAAGATGGAAGGGCTGTGTA
TAATGGGCACCAACTCGGAGGTGTCACTGTGCACAGCAAGGATCGGGTGAAATCTGCAGAGGCCATTCAG
CTTACCTACTATCTGCAATCAATCAACAGTCTCAATGACATGGTAGCTGAGAGGTGGGAGTCCAGCTTCT
GTGACACTGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACACATCCTCATCACT
GAGGGAAGATTTCCAGAAGACCAGCCGTGTATCAGAACGTTACCTGGTCACCAGCCTGATCCTGGTAGTC
ACCATGGCTATTCTGTGCTGCTCTATGCAGGACTGTGTCCGCAGCAAACCCTGGTTAGGCCTACTTGGGT
TGGTGACCATAAGCCTAGCCACTCTCACTGCAGCCGGAATCATCAATCTCACTGGTGGAAAATACAACTC
CACCTTCCTGGGAGTCCCTTTCGTCATGCTAGGTCATGGATTATACGGGACTTTTGAAATGTTATCCTCG
TGGAGGAAAACTAGAGAGGACCAACATGTTAAAGAGCGAACTGCAGAAGTCTATGCAGACTCCATGCTCT
CCTTCTCTCTCACCACTGCCATGTACTTGGTCACCTTCGGCATCGGGGCCAGCCCTTTCACAAACATTGA
GGCAGCCAGGATTTTCTGCTGCAACTCCTGTATTGCAATCCTCTTCAACTACCTCTATGTACTCTCATTT
TATGGTTCCAGCCTTGTGTTCACTGGCTACATAGAAAACAATTACCAGCATAGTATATTCTGTAGAAAAG
TTCCGAAGCCTGATGTATTACAGGAGAAGCCAGCATGGTATAGGTTTCTTCTGACGGCTAGATTCAGTGA
GGAAACAGCTGAAGGTGAGGAAGCAAACACTTATGAGAGTCACTTATTGGTATGTTTCCTCAAACGCTAT
TACTGTGACTGGATAACCAACACCTATGTCAAGCCTTTTGTAGTCCTCTTTTACCTTATTTATATTTCCT
TTGCCTTAATGGGCTATCTGCAGGTCAGTGAAGGGTCAGACCTTAGTAACATCGTAGCAACTGCAACACA
AACCATTGAGTACACTACTGCCCACCAAAAGTACTTTAACAACTACAGTCCTGTTATTGGGTTTTACATA
TATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTACACTAAGGGTTTTGTGC
GGATATCCTGGTTTGAAAGCTATTTAAATTATCTTCGGAAACTCAATGTGTCCACTGACTTGCCTAAGAA
AAATTTCACAGACATGTTGAGGAATTCCTTCCTGAAAACTCCTCAATTTTCACATTTTCAAGAGGACATC
ATCTTCTCTAAAAAGTACAATGATGAGGTTGATGTAGTGGCCTCTAGAATGTTTTTGGTGGCCAAGACTA
TGGAAACAAACAGAGAAGAACTTTATGATCTCTTGGAGACTCTGAGGAGGCTTTCAGTCACCTCCAAGGT
GAAGTTCATTGTCTTTAATCCGTCTTTTGTGTACATGGATCGATATGCCTCCTCTCTGGGAGCCCCCCTG
CACAATTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCGCTGATCA
ACGTCTGGATCACTCTCACGGTTGTGTCTGTGGAGTTTGGAGTGATAGGCTTCATGACATTATGGAAAGT
CGAACTGGATTGCATTTCTGTGCTATGCTTAATTTATGGAATTAACTACACAATTGACAACTGTGCTCCA
CTGTTATCCACATTTGTTCTAGGCAAGGATTTTACAAGAACTAAATGGGTTAAAAATGCCCTGGAAGTGC
ATGGGGTAGCTATTTTACAGAGTTACCTCTGTTATATTGTTGGTCTATTTCCTCTTGCAGCTGTGCCTTC
AAATCTGACCTGTACACTGTTCAGGTGCTTGTTTTTAATAGCATTTGTCACCTTCTTTCACTGCTTTGCC
ATTTTACCTGTGATACTTACTTTCCTGCCACCCTCTAAGAAAAAAAGGAAAGAGAAGAAAAATCCTGAAA
ACCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATTGATAGTACTCGAGTGGTTGACCAAATAACCAC
AGTGTGA

Translation (888 aa):
MLRQVLHRGLRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLV
NSLFPVNRSKHRLYSDLQTPGRYGRVIVTSYQKANMLDQHHTDLILKLHTAVTKIQVPRPGFNYTFAHIC
VLNNDKTCIVDDIVHVLEELKNARATNRTNFAITYPITHLKDGRAVYNGHQLGGVTVHSKDRVKSAEAIQ
LTYYLQSINSLNDMVAERWESSFCDTVKLFQKSNSKVKIYPYTSSSLREDFQKTSRVSERYLVTSLILVV
TMAILCCSMQDCVRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGVPFVMLGHGLYGTFEMLSS
WRKTREDQHVKERTAEVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAILFNYLYVLSF
YGSSLVFTGYIENNYQHSIFCRKVPKPDVLQEKPAWYRFLLTARFSEETAEGEEANTYESHLLVCFLKRY
YCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIEYTTAHQKYFNNYSPVIGFYI
YESIEYWNSSVQEDVLEYTKGFVRISWFESYLNYLRKLNVSTDLPKKNFTDMLRNSFLKTPQFSHFQEDI
IFSKKYNDEVDVVASRMFLVAKTMETNREELYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYASSLGAPL
HNSCISALFLLFFSAFLVADSLINVWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAP
LLSTFVLGKDFTRTKWVKNALEVHGVAILQSYLCYIVGLFPLAAVPSNLTCTLFRCLFLIAFVTFFHCFA
ILPVILTFLPPSKKKRKEKKNPENREEIECVEMVDIDSTRVVDQITTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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