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Report for CCDS20795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20795.1 Public Mus musculus 7 Nlrp4b 23 108 98 CCDS HistoryNCBI Gene:210045Re-query CCDS DB by CCDS ID:20795.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047809.10 ENSMUSP00000043881.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047809.10Link to Ensembl Protein Viewer:ENSMUSP00000043881.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047809Re-query CCDS DB by Protein ID:ENSMUSP00000043881
Original member Current member EBI ENSMUST00000117413.8 ENSMUSP00000113095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117413.8Link to Ensembl Protein Viewer:ENSMUSP00000113095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117413Re-query CCDS DB by Protein ID:ENSMUSP00000113095
Original member Current member NCBI NM_001355151.1 NP_001342080.1 Accepted alive Link to Nucleotide Sequence:NM_001355151.1Link to Protein Sequence:NP_001342080.1Re-query CCDS DB by Nucleotide ID:NM_001355151Re-query CCDS DB by Protein ID:NP_001342080Link to BLAST:NP_001342080.1
Original member Current member NCBI NM_172481.2 NP_766069.1 Accepted alive Link to Nucleotide Sequence:NM_172481.2Link to Protein Sequence:NP_766069.1Re-query CCDS DB by Nucleotide ID:NM_172481Re-query CCDS DB by Protein ID:NP_766069Link to BLAST:NP_766069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342080.1 863 Q8C6J9 863 100% 0 0
NP_766069.1 863 Q8C6J9 863 100% 0 0

Chromosomal Locations for CCDS 20795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 10710126 10710402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10714149 10715703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10718540 10718698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10719127 10719291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10724912 10725082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10725800 10725970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10729550 10729643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGGCATCTCTGTTTTCAGATTTTGGCTTTATATGGTACTGGAAAGAGCTAAACAAGATAGAATTCATGT
ATTTTAAGGAATTACTCATACATGAAATTCTGCAAATGGGTCTAAAACAGATTTCTTGGACTGAAGTAAA
GGAAGCATCTCGGGAAGACCTTGCCATCTTACTGGTAAAACATTGTGACGGGAATCAAGCCTGGGATACG
ACCTTCAGAGTCTTCCAGATGATTGGGAGGAATGTTATCACTAATAGGGCAACAGGAGAGATTGCTGCAC
ACTCAACAATATATCGAGCTCATTTAAAGGAGAAGCTGACCCATGATTGTTCTAGAAAGTTCAACATCAG
TATTCAGAATTTCTTCCAGGATGAATATGATCATCTTGAGAACCTTCTTGTACCAAATGGAACTGAAAAC
AATCCAAAGATGGTTGTCCTGCAAGGTGTAGCTGGAATTGGCAAGACTATTCTGTTAAAAAATTTAATGA
TTGTCTGGTCAGAAGGCCTGGTATTTCAGAACAAATTCTCTTATATCTTCTACTTCTGCTGTCATGATGT
GAAGCAATTGCAGACAGCAAGCCTGGCTGATCTGATCTCCAGAGAGTGGCCTAGCCCCTCAGCTCCCATG
GAGGAGATCCTATCCCAACCTGAGAAACTCTTATTCATCATTGACAGCTTAGAAGGGATGGAATGGAATG
TTACCCAACAGGATTCGCAGCTGTGTTACAATTGCATGGAGAAGCAGCCAGTAAATGTATTGCTGAGCAG
TTTGCTCAGGAAGAAGATACTCCCTGAATCATCTCTCCTCATCTCCACTAGTTGTGAGACTTTTAAGGAT
TTGAAGGACTGGATTGAGTACACAAATGTGAGAACAATAACCGGATTCAAGGAAAACAATATTAATATGT
GTTTCCACAGCTTGTTCCAAGATAGGAACATTGCCCAGGAGGCCTTCAGTTTGATAAGAGAAAATGAGCA
GCTGTTCACTGTATGTCAGGCCCCTGTGGTCTGCTACATGGTGGCTACTTGTCTTAAAAATGAGATAGAG
AGTGGAAAAGACCCAGTCTCCATCTGCCGACGTACCACCTCCCTGTATACCACTCACATCTTAAATTTGT
TCATTCCCCACAATGCCCAAAATCCAAGTAACAATAGCGAAGACCTGCTGGATAACTTGTGTTTTCTAGC
TGTAGAGGGCATGTGGACTGATATATCTGTGTTTAATGAGGAGGCTCTAAGGAGAAATGGGATCATGGAT
TCTGACATCCCCACACTGCTGGATATTGGAATTCTTGAGCAGAGCAGGGAATCTGAAAATTCTTACATAT
TCCTCCACCCGTCTGTCCAGGAGTTCTGTGCGGCCATGTTTTATCTGCTACATAGTGAAATGGATCACTC
TTGTCAGGGTGTTTACTTTATAGAAACATTCCTGTTTACTTTTCTAAACAAGATCAAAAAACAGTGGGTT
TTTTTGGGCTGTTTCTTCTTTGGTCTTTTACATGAAACAGAACAAGAAAAGCTGGAGGCATTTTTTGGCT
ACCACTTATCTAAAGAATTAAGGCGACAGTTGTTTTTGTGGCTGGAACTCCTATTGGACACTTTACATCC
TGACGTAAAAAAAATAAATACCATGAAGTTCTTTTACTGTCTGTTTGAGATGGAAGAGGAAGTCTTTGTA
CAGTCAGCAATGAACTGTAGGGAACAGATTGACGTTGTGGTTAAGGGTTATTCTGATTTTATTGTTGCTG
CCTACTGCTTAAGCCATGGCTCTGCACTGACAGACTTCTCCATTTCAGCTCAAAATGTGCTGAATGAAGA
GCTAGGCCAGAGGGGAAAGCTACTCATACTTTGGCATCAAATATGCTCTGTGTTCCTAAGGAATAAAGAT
ATCAAAACACTCAGAATAGAAGACACTATTTTCAATGAACCAGTCTTTAAAATCTTTTATTCTTATTTGA
AGAACTCCAGCTGTATCCTTAAAACACTTGTGGCATATAATGTTTCCTTTTTATGTGATAAGCGCCTATT
CTTGGAATTGATTCAAAGCTACAATTTGGAGGAATTGTATCTCAGAGGCACATTCCTCTCCCACAGTGAT
GTGGAAATGTTGTGTGATATCTTGAACCAGGCAGAGTGCAACATACGCATACTGGATTTAGCTAACTGTT
CCCTCTGTGAGCATTCTTGGGACTACCTTTCTGATGTTCTTAGGCAGAACAAATCCCTGAGATACCTAAA
CATCAGCTACAATAACCTGAAGGATGAAGGGCTGAAGGCTCTCTGTAGAGCTCTGACTCTCCCAAACTCT
GCTCTGCATTCACTAAGTTTGGAAGCCTGTCAACTGACTGGTGCCTGTTGTAAGGACCTTGCTTCTACTT
TTACGCGATATAAATGCCTGCGGAGGATCAACCTGGCGAAGAACTCCTTGGGCTTCAGTGGATTGTTTGT
GCTGTGTAAGGCTATGAAAGACCAAACGTGTACCTTGTATGAGCTAAAACTGCGAATGGCTGACTTTGAT
AGCGATTCCCAGGAATTTCTACTTTCTGAGATGGAAAGAAATAAAATCTTGAGCATCGAAAATGGTGTGT
AA

Translation (863 aa):
MASLFSDFGFIWYWKELNKIEFMYFKELLIHEILQMGLKQISWTEVKEASREDLAILLVKHCDGNQAWDT
TFRVFQMIGRNVITNRATGEIAAHSTIYRAHLKEKLTHDCSRKFNISIQNFFQDEYDHLENLLVPNGTEN
NPKMVVLQGVAGIGKTILLKNLMIVWSEGLVFQNKFSYIFYFCCHDVKQLQTASLADLISREWPSPSAPM
EEILSQPEKLLFIIDSLEGMEWNVTQQDSQLCYNCMEKQPVNVLLSSLLRKKILPESSLLISTSCETFKD
LKDWIEYTNVRTITGFKENNINMCFHSLFQDRNIAQEAFSLIRENEQLFTVCQAPVVCYMVATCLKNEIE
SGKDPVSICRRTTSLYTTHILNLFIPHNAQNPSNNSEDLLDNLCFLAVEGMWTDISVFNEEALRRNGIMD
SDIPTLLDIGILEQSRESENSYIFLHPSVQEFCAAMFYLLHSEMDHSCQGVYFIETFLFTFLNKIKKQWV
FLGCFFFGLLHETEQEKLEAFFGYHLSKELRRQLFLWLELLLDTLHPDVKKINTMKFFYCLFEMEEEVFV
QSAMNCREQIDVVVKGYSDFIVAAYCLSHGSALTDFSISAQNVLNEELGQRGKLLILWHQICSVFLRNKD
IKTLRIEDTIFNEPVFKIFYSYLKNSSCILKTLVAYNVSFLCDKRLFLELIQSYNLEELYLRGTFLSHSD
VEMLCDILNQAECNIRILDLANCSLCEHSWDYLSDVLRQNKSLRYLNISYNNLKDEGLKALCRALTLPNS
ALHSLSLEACQLTGACCKDLASTFTRYKCLRRINLAKNSLGFSGLFVLCKAMKDQTCTLYELKLRMADFD
SDSQEFLLSEMERNKILSIENGV


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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