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Report for CCDS24107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24107.1 Public Mus musculus 10 Nup37 23 108 98 CCDS HistoryNCBI Gene:69736Re-query CCDS DB by CCDS ID:24107.1Re-query CCDS DB by GeneID:69736See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052355.14 ENSMUSP00000059880.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052355.14Link to Ensembl Protein Viewer:ENSMUSP00000059880.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052355Re-query CCDS DB by Protein ID:ENSMUSP00000059880
Original member Current member EBI ENSMUST00000169309.2 ENSMUSP00000129728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169309.2Link to Ensembl Protein Viewer:ENSMUSP00000129728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169309Re-query CCDS DB by Protein ID:ENSMUSP00000129728
Original member Current member NCBI NM_027191.2 NP_081467.2 Accepted alive Link to Nucleotide Sequence:NM_027191.2Link to Protein Sequence:NP_081467.2Re-query CCDS DB by Nucleotide ID:NM_027191Re-query CCDS DB by Protein ID:NP_081467Link to BLAST:NP_081467.2
Original member Current member NCBI NM_028334.4 NP_082610.1 Accepted alive Link to Nucleotide Sequence:NM_028334.4Link to Protein Sequence:NP_082610.1Re-query CCDS DB by Nucleotide ID:NM_028334Re-query CCDS DB by Protein ID:NP_082610Link to BLAST:NP_082610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081467.2 326 Q9CWU9 326 100% 0 0
NP_082610.1 326 Q9CWU9 326 100% 0 0

Chromosomal Locations for CCDS 24107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88148224 88148379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88153524 88153648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88158858 88158930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88160876 88160970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88171995 88172085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88174386 88174567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88174883 88174933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88177073 88177166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88178134 88178247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGAAGCAAGATGCTACAAGAAATGCTGCGTACACCGTGGATTGCGAAGATTATGTGCACGTGGTAGAAT
TTAATCCCTTTGAGAGTGGAGATTCAGGAAACCTGATTGCATATGGCGGCAGTAATTATGTGGTTGTTGG
CATGTGTACGTTTCAGGAGGAAGAAACAGACATCGAAGGGATTCAGTATAAAACACTACGAACATTTCAC
CATGGAGTCCGAGTTGACGGCATTGCCTGGAGCCCAGAGACCAAACTTGACTCGCTGCCTCCTGTAATCA
AATTTTGTACTTCAGCTGCTGATTTGAAGATTAGATTATTTACTTCAGATCTTCAAGATAAAAATGAATA
TAAGGTTTTGGAGGGCCACTCAGACTTCATTAATGATCTGGTGTTCCATCCCAAAGAAGGCCAGGAGCTC
GCAAGCGTGAGTGACGACCACACCTGCAGGATTTGGAACTTGGAAGGAAAGCAGACAGCTCATTTTCTTC
TGCATTCTCCTGGAATGAGTGTATGCTGGCATCCCGAGGAAACTTTCAAGCTAATGGTTGCAGAGAAGAA
TGGAACAATCCGGTTTTATGATCTAATGGCTCAGCAGGCAATTTTATCTCTTCAGTCAGAGCAGACACCC
TTAATGTCAGCACACTGGTGCTTAAAAAACACCTTCAAAGTTGGTGCTGTGGCAGGAAATGATTGGATTA
TTTGGGATATCACTCGGTCCAGTTATCCTCAAGAAACAAGACCTGTTCACATGGACCGAGCACACTTATT
TAGGTGGTCGGCCATTAGTGAAAACTTGTTTGCAACCACTGGATATCCTGGCAAAATGGCCAGTCAGTTT
CAGATTCATCATTTAGGGCACTCTCAGCCCGTCCTCATTGGTTCTGTAGCTGTCGGTTCTGGTCTTTCCT
GGCATAGAACACTTCCACTGTGTGCAGTTGGAGGCGACCACAAGCTCTTGTTCTGGGTGACAGAAATATG
A

Translation (326 aa):
MKQDATRNAAYTVDCEDYVHVVEFNPFESGDSGNLIAYGGSNYVVVGMCTFQEEETDIEGIQYKTLRTFH
HGVRVDGIAWSPETKLDSLPPVIKFCTSAADLKIRLFTSDLQDKNEYKVLEGHSDFINDLVFHPKEGQEL
ASVSDDHTCRIWNLEGKQTAHFLLHSPGMSVCWHPEETFKLMVAEKNGTIRFYDLMAQQAILSLQSEQTP
LMSAHWCLKNTFKVGAVAGNDWIIWDITRSSYPQETRPVHMDRAHLFRWSAISENLFATTGYPGKMASQF
QIHHLGHSQPVLIGSVAVGSGLSWHRTLPLCAVGGDHKLLFWVTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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