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Report for CCDS18067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18067.1 Public Mus musculus 4 Cntfr 23 108 98 CCDS HistoryNCBI Gene:12804Re-query CCDS DB by CCDS ID:18067.1Re-query CCDS DB by GeneID:12804See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102961.9 ENSMUSP00000100026.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102961.9Link to Ensembl Protein Viewer:ENSMUSP00000100026.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102961Re-query CCDS DB by Protein ID:ENSMUSP00000100026
Original member Current member EBI ENSMUST00000102962.9 ENSMUSP00000100027.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102962.9Link to Ensembl Protein Viewer:ENSMUSP00000100027.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102962Re-query CCDS DB by Protein ID:ENSMUSP00000100027
Original member NCBI NM_001136056.3 NP_001129528.1 Updated not alive Link to Nucleotide Sequence:NM_001136056.3Link to Protein Sequence:NP_001129528.1Re-query CCDS DB by Nucleotide ID:NM_001136056Re-query CCDS DB by Protein ID:NP_001129528
Current member NCBI NM_001136056.4 NP_001129528.1 Accepted alive Link to Nucleotide Sequence:NM_001136056.4Link to Protein Sequence:NP_001129528.1Re-query CCDS DB by Nucleotide ID:NM_001136056Re-query CCDS DB by Protein ID:NP_001129528Link to BLAST:NP_001129528.1
Original member NCBI NM_016673.2 NP_057882.2 Updated not alive Link to Nucleotide Sequence:NM_016673.2Link to Protein Sequence:NP_057882.2Re-query CCDS DB by Nucleotide ID:NM_016673Re-query CCDS DB by Protein ID:NP_057882
Current member NCBI NM_016673.3 NP_057882.2 Accepted alive Link to Nucleotide Sequence:NM_016673.3Link to Protein Sequence:NP_057882.2Re-query CCDS DB by Nucleotide ID:NM_016673Re-query CCDS DB by Protein ID:NP_057882Link to BLAST:NP_057882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129528.1 372 O88507 372 100% 0 0
NP_057882.2 372 O88507 372 100% 0 0

Chromosomal Locations for CCDS 18067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41658152 41658152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41658241 41658409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41658781 41658961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41661973 41662136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41663202 41663368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41663540 41663657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41670843 41671076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41675020 41675104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCTGCTTCTGTCCCATGGGCCTGCTGTGCTGTGCTTGCCGCTGCCGCCGCCGCTGTCTACACGCAGA
AACACAGTCCACAGGAGGCACCCCACGTGCAGTATGAGCGTCTGGGCGCAGATGTGACGCTGCCGTGTGG
GACAGCGAGCTGGGACGCAGCTGTGACATGGAGGGTAAACGGGACAGATCTGGCCCCTGACCTGCTCAAC
GGCTCTCAGCTGATACTGCGAAGCTTAGAACTGGGCCACAGTGGCCTATACGCCTGTTTCCACCGTGACT
CCTGGCACCTGCGCCACCAAGTCCTTCTACATGTGGGTTTGCCGCCGCGGGAGCCTGTGCTCAGCTGCCG
CTCCAACACTTACCCCAAGGGCTTCTACTGCAGCTGGCACCTGCCCACCCCCACCTACATCCCCAATACC
TTCAATGTGACTGTGCTGCATGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCT
GCCACATTCGGTACATGCACCTGTTCTCAACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAACGCCTT
GGGTCACAACACTACGGCCATCACCTTTGACGAATTCACCATTGTGAAGCCTGATCCTCCAGAAAACGTG
GTGGCCCGGCCAGTGCCCAGCAACCCCCGTCGGCTGGAGGTGACATGGCAGACACCCTCAACTTGGCCCG
ACCCTGAATCCTTTCCTCTCAAGTTCTTCCTGCGCTACCGGCCTCTCATCCTGGACCAATGGCAGCATGT
GGAGCTCTCGGATGGCACAGCACACACCATCACAGATGCCTACGCAGGGAAGGAATACATCATCCAGGTG
GCAGCCAAGGACAATGAGATTGGGACATGGAGTGACTGGAGCGTGGCTGCTCACGCCACACCCTGGACTG
AGGAACCTCGGCATCTCACAACAGAAGCCCAGGCCCCCGAGACCACGACCAGCACCACCAGCTCATTGGC
ACCCCCACCCACCACGAAGATCTGTGACCCTGGGGAGCTTGGCAGCGGCGGAGGACCCTCCATACTCTTC
TTGACCAGTGTCCCAGTCACTCTGGTCCTGGCTGCCGCTGCTGCCACAGCCAACAATCTCCTGATCTGA

Translation (372 aa):
MAASVPWACCAVLAAAAAAVYTQKHSPQEAPHVQYERLGADVTLPCGTASWDAAVTWRVNGTDLAPDLLN
GSQLILRSLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNT
FNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNTTAITFDEFTIVKPDPPENV
VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQV
AAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAPETTTSTTSSLAPPPTTKICDPGELGSGGGPSILF
LTSVPVTLVLAAAAATANNLLI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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