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Report for CCDS52990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52990.1 Public Mus musculus X Slc38a5 23 108 98 CCDS HistoryNCBI Gene:209837Re-query CCDS DB by CCDS ID:52990.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033512.10 ENSMUSP00000033512.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033512.10Link to Ensembl Protein Viewer:ENSMUSP00000033512.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033512Re-query CCDS DB by Protein ID:ENSMUSP00000033512
Original member Current member NCBI NM_172479.3 NP_766067.2 Accepted alive Link to Nucleotide Sequence:NM_172479.3Link to Protein Sequence:NP_766067.2Re-query CCDS DB by Nucleotide ID:NM_172479Re-query CCDS DB by Protein ID:NP_766067Link to BLAST:NP_766067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766067.2 479 Q3U1J0-1 479 100% 0 0

Chromosomal Locations for CCDS 52990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8271483 8271505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8271887 8271943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8272031 8272109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8272652 8272767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8272875 8272948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8273587 8273679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8273798 8273876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8276120 8276202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8276579 8276637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8276740 8276868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8277021 8277100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8277693 8277793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8278029 8278144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8278858 8279002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8279093 8279196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8279752 8279853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCCATTTCATGCGCTGTGGGGATGGAAATGCAGGAACCAAAGATGAATGGAACCCTCTCTGCGGGTG
CTGCTGCGGGCTACAGGCAGGAACGCGAAGGCTTCCTGCCCACCACCCGTAACCCTGCTACTGGGAGGAA
ACCTGTCCAGTTCTTGGATTTCGAGGGGAAGACATCATTCGGAATGTCAGTGTTCAACCTCAGCAACGCT
ATCATGGGGAGTGGCATCCTGGGACTGGCTTATGCCATGGCACACACTGGAGTCATCTTCTTTTTGGCCC
TGCTGCTGTGCATTGCTCTCCTGTCTTCTTACTCCATTCACCTCCTGCTGACCTGTGCCAGTGTTGTAGG
CATCCGTGCCTATGAGCAGCTGGGACAGAGGGCATTTGGACCTGCCGGGAAAGTAGTCGTGGCCATCATC
ATCTGTCTGCACAACGTTGGGGCTATGTCCAGTTACCTGTTCATCATCAAATCTGAACTCCCCCTTGTTA
TTGGCACCTTCCTGCACATGGACCCTGAGGGAGACTGGTTCTTGAAGGGGAATCTCCTTATCATCCTGGT
CAGCTTGTTAATCATCTTGCCCCTGGCTCTCATGAAACACCTGGGCTACCTGGGGTACACAAGCAGCCTC
TCCCTGACCTGCATGCTGTTTTTTCTCATTTCGGTCATCTATAAGAAGTTCCAGATTGGCTGTGATGTGA
GCCACAATGACACAGTAGTGGAGGCTGAACAAGCTCCTTTGCAGGCGTTTAACAGCAGCTGCGAGGCCGA
GCTCTTCACCGTTGACTCGCAGATGTCTTACACAGTGCCTATTATGGCTTTTGCGTTTGTCTGCCACCCT
GAGGTGCTGCCCATCTACACAGAACTTTGCCGCCCCACCCAGCGCAGGATGCAAGCTGTGGCCAACATGT
CCATCGGAGCTATGTTCATCATGTATGGACTCACAGCGACCTTTGGATACCTCACCTTCTACAGCACTGT
GAAGGCAGAGATGCTGGAAATGTACACCCAGGAGGACATGCTTATCCTTTGTGTGCGTCTGGCCGTACTG
CTTGCAGTAACCCTCACTGTGCCTGTTGTGCTTTTCCCTATCCGCCGAGCCCTCCAGCAGCTGCTCTTTC
CAAGCAAGGCCTTCAGCTGGCTACGCCATGTGGCCATTGCCTTGATTCTGCTTATTCTGGTCAATATCCT
CGTCATCTGTGTGCCAACCATCCGCGATATCTTTGGGTTTATTGGGTCCACTTCAGCCCCTAGCCTCATC
TTCATCCTTCCCAGTGTCTTCTACCTCCGTATTGTACCTACTGAGGTGGAACCTTTGTTTTCCTGGCCCA
AGATCCAGGCCCTGTGCTTTGGTGTCCTGGGAGTCCTCTTCATGGCCATCAGCCTGGGCTTCATGTTTGC
CAACTGGGCCACAGGCCAGAGCCGTATGTCTGGCCACTGA

Translation (479 aa):
MAISCAVGMEMQEPKMNGTLSAGAAAGYRQEREGFLPTTRNPATGRKPVQFLDFEGKTSFGMSVFNLSNA
IMGSGILGLAYAMAHTGVIFFLALLLCIALLSSYSIHLLLTCASVVGIRAYEQLGQRAFGPAGKVVVAII
ICLHNVGAMSSYLFIIKSELPLVIGTFLHMDPEGDWFLKGNLLIILVSLLIILPLALMKHLGYLGYTSSL
SLTCMLFFLISVIYKKFQIGCDVSHNDTVVEAEQAPLQAFNSSCEAELFTVDSQMSYTVPIMAFAFVCHP
EVLPIYTELCRPTQRRMQAVANMSIGAMFIMYGLTATFGYLTFYSTVKAEMLEMYTQEDMLILCVRLAVL
LAVTLTVPVVLFPIRRALQQLLFPSKAFSWLRHVAIALILLILVNILVICVPTIRDIFGFIGSTSAPSLI
FILPSVFYLRIVPTEVEPLFSWPKIQALCFGVLGVLFMAISLGFMFANWATGQSRMSGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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