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Report for CCDS49029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49029.1 Public Mus musculus 12 Rad51ap2 23 108 98 CCDS HistoryNCBI Gene:209550Re-query CCDS DB by CCDS ID:49029.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124065.1 ENSMUSP00000128854.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124065.1Link to Ensembl Protein Viewer:ENSMUSP00000128854.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124065Re-query CCDS DB by Protein ID:ENSMUSP00000128854
Original member Current member NCBI NM_001111118.2 NP_001104588.1 Accepted alive Link to Nucleotide Sequence:NM_001111118.2Link to Protein Sequence:NP_001104588.1Re-query CCDS DB by Nucleotide ID:NM_001111118Re-query CCDS DB by Protein ID:NP_001104588Link to BLAST:NP_001104588.1

Chromosomal Locations for CCDS 49029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11456079 11458815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11459362 11459436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11462566 11462684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGTCTCTGTCGCGCCCCGCGTGGCCTGCAGGGCCTGCCTGGCCTGTCTCCTCAGAACCGCCTCCTGAGG
ACCCCGCTGCGGCGTCCCCCAGCAGCAAGCGGCGGCGTCTGAAGGAGCCTGACGGCGGAGTCTCTGAGGC
GGGATGGCCGCTGCTTGTGGTGCCTCGCTTGTCTGAGGTAGAAAAAGTCTGGGAGTGGTCGCTCAGACCC
TTCACAGCGTTCCTCATTCCAAAGAGCCCGGGGAGCTCAGCCGGTGGGAAGCAGTCGTGTGACCTGGGAT
GTCGGGACAGAACATTCCAGGCGCACAGCTGTTGGCAGTCTGGAATCTTAGGTTGTTCTAGGGCTCCAAG
AAGGTCTTGTGAAGCAGGACTGCAGGACAGGGAGGTTCAGGGGGTGCGCCTTGGTGACCAAGCAGAAGTG
AGTCATGCTCCACCCAATAGCCCCATGCCCTATGTCCAAGGAGTCAAACAGGAGCCTGAAGAACTTCCTG
AGAAGGAAACTATTCTGAAAGAAAAGAATTCTGTGAGAGAGCCAGGAAACCCATTTCTAGATGTACCATT
TTCTGAGGAAACTAAGTCAGCATTACATGAAATTAAAGACAGATGTAAAGTTGACAGTGTTATAACCTCT
GAGAAAAAAGAAAACGTTTCATCGTCTACACTAAAAATATCAAAATTTCAAAACCAGGCCTGCTTGGAAA
GTGCCAAACCTAGCTATTTTAGAGATAGCAACACAAAAAATTTCTTTGAGTTTCCAAGGGATTTAAATAG
CAACATGTCCTTTGTCTATTTAAAGGAAACAGCAAAGAAAAAAAATGACAAAATTGTGGCATATGTTAGG
GATTTCACAAACATTTTCTCGTCCCAAAATAGACCGAATGCTAAGAAACAAAAGTTACAGGATGATAAAA
AAAATGTATATGTGGAAAATGATTTTTCTGACTATTCTGAAAGTTACCACCAGTCACTCACCATTGAAGG
GAAAATAGACTTGATCAATTTAAACTACTATAGGCACAGTAGTATTGAGTGTGATGTAAGAGACTCTAAA
AAGAATTTCACTCTAACACTAGAAGTTGCAAATTGCGAGGGAACAGAAAGGAATCAAGAGTATTACATAC
CTACCAGACAAGAATTTCAAAACTTGGACTGTGACAGATCTATTTTGAAAATAAAAAAGGAAAATTGTTG
GAGAATAAAAAAAATTAGGATTATTTGTGAGAATAATATGATTCTGGAAAACAATATAGTTTCTTTGCAT
GATAACTTTGATTCTTTCATAAGAAAGAAAGAAAAGAAGAAAGATGATAGGGAATCAGAAGAGGGATGCA
TTTTCAAATATATAGTGAATTTGAATTATTTGAAAAATATTAAAAAGGAAAGATATATTGTGTATCTAAC
AAAGATGTTAACTTCTTTAAGACTGTTAGAATGTAATACAAAATCTACAGCAAAGAAAAGGAAACTATTT
AAAACGGAACATGTTCTTCAACGGGTTAAGAAACAAAACATCAATTCTCTTACTATGACAACTAAAATTT
TTCTAATTTACAAACTATGTGAAAATGTTCCCCCTTTAATGGGTTTTGATAACACGGAAGAACTTTCTTT
GACAAAAGAATCTAGTTATGAGAGTACAAGATGTGCCAAACTACTACTAAATATGAAAAATTTGGATTAT
TATAGTTTTGGTATTGATGGCACACATGTGGAGTCTGATCCTCTATTTATACAGAATAACTGTGGACATA
TTAATGAAAAATATTATGAGAGTAGTATGTATAATCAAGATTTAGATACTGTAAGAAAATGGAAGCATAA
GACCATTCACTTTATTTTTAAGTCGATATTTGAAGATGTCTTTAATGTTAGACAACTGTGCACATTGTTA
AGCCAAAATACATCACACAGTGACCAGATTAATGCTATGGCGATAACTCTGAAGATCAGCTTGGAGAATC
TGTTAAGTGAAACAGAAGGGAAAATATATGATTTTGTTTTGAAGAGAGAAATGAAGGTCACAAAAAGTTC
AAGTAGTTTTCAAGCCCATAACGCTATTGACACTGAGAAGGAAGAGGATAGTTTTCCCACAATGGACGGA
ATGTCTTCAGTGCAGTCAGCTTCGCTAGTGAGTAAGAGCATAAATATGGAAGAAACTAAATCTCTTAATC
AAAATAATAGAACTAGCACAAAAGAGGATGGAGGTATTTTGCAAGAAAGTGAGTTAGCTAATTCAAAGCA
TTTTCATCCAAAGAATGAGTCTGCATTATATGCTAATCATCAATTTGAAAGTGACTCAAGTGGGGAGAAC
AATGAATGTTTTCAGGGTTTAACTGCTACATGTTTATCAACAGAAACTCTGCCAATAGCAGAAGAGTTTG
AGATGAAGAGCAAATTTGATTTAGTACTTGAAGAACTTCGAATGTTTCATGAAATTAGTAAGGAAAATGA
AATTCCAAGTACCAGGATGACAAACAATAGGAAAGAAAATTACTTTGGAGAAAGTAATGATGTTAAAGAG
GCAAGAATGGAGATAGGAAAAAAACTGGAAATGGTTGAAACCAACACAAGAAATGCACCTTTTTTGTCCT
GTGATGTGAAGGCAGGTCTCAACAAACATAAAAGGCACCAAAGTTTATTTAACTGGAAAATGCTACCTAC
TCATGGAGGACAGGCAGTTCCCAATGAGTGTTGGCCAAGATCAGAGGAACGATCACTCCATTCTACTCCT
GAGGAAGATTATAAGAAACATTTACCTAAAAGCCCTACTTTTTCCCCTGATGAATATAAAAATGAAACTT
TATTGAAGGGAGGCAGTCATTTTTCGCATGGGATTTCCAGAGTACAGCCTCTTAAGACATGCAGTCGTCC
AATTAGGGTTGGCTTGTCAAGAAGAGCTAGGCTGAAACAGCTTCATCCTTACCTGAAATGA

Translation (976 aa):
MSLSRPAWPAGPAWPVSSEPPPEDPAAASPSSKRRRLKEPDGGVSEAGWPLLVVPRLSEVEKVWEWSLRP
FTAFLIPKSPGSSAGGKQSCDLGCRDRTFQAHSCWQSGILGCSRAPRRSCEAGLQDREVQGVRLGDQAEV
SHAPPNSPMPYVQGVKQEPEELPEKETILKEKNSVREPGNPFLDVPFSEETKSALHEIKDRCKVDSVITS
EKKENVSSSTLKISKFQNQACLESAKPSYFRDSNTKNFFEFPRDLNSNMSFVYLKETAKKKNDKIVAYVR
DFTNIFSSQNRPNAKKQKLQDDKKNVYVENDFSDYSESYHQSLTIEGKIDLINLNYYRHSSIECDVRDSK
KNFTLTLEVANCEGTERNQEYYIPTRQEFQNLDCDRSILKIKKENCWRIKKIRIICENNMILENNIVSLH
DNFDSFIRKKEKKKDDRESEEGCIFKYIVNLNYLKNIKKERYIVYLTKMLTSLRLLECNTKSTAKKRKLF
KTEHVLQRVKKQNINSLTMTTKIFLIYKLCENVPPLMGFDNTEELSLTKESSYESTRCAKLLLNMKNLDY
YSFGIDGTHVESDPLFIQNNCGHINEKYYESSMYNQDLDTVRKWKHKTIHFIFKSIFEDVFNVRQLCTLL
SQNTSHSDQINAMAITLKISLENLLSETEGKIYDFVLKREMKVTKSSSSFQAHNAIDTEKEEDSFPTMDG
MSSVQSASLVSKSINMEETKSLNQNNRTSTKEDGGILQESELANSKHFHPKNESALYANHQFESDSSGEN
NECFQGLTATCLSTETLPIAEEFEMKSKFDLVLEELRMFHEISKENEIPSTRMTNNRKENYFGESNDVKE
ARMEIGKKLEMVETNTRNAPFLSCDVKAGLNKHKRHQSLFNWKMLPTHGGQAVPNECWPRSEERSLHSTP
EEDYKKHLPKSPTFSPDEYKNETLLKGGSHFSHGISRVQPLKTCSRPIRVGLSRRARLKQLHPYLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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