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Report for CCDS20011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20011.1 Public Mus musculus 6 Zc3hav1l 23 108 98 CCDS HistoryNCBI Gene:209032Re-query CCDS DB by CCDS ID:20011.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058524.2 ENSMUSP00000062475.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058524.2Link to Ensembl Protein Viewer:ENSMUSP00000062475.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058524Re-query CCDS DB by Protein ID:ENSMUSP00000062475
Original member Current member NCBI NM_172467.3 NP_766055.1 Accepted alive Link to Nucleotide Sequence:NM_172467.3Link to Protein Sequence:NP_766055.1Re-query CCDS DB by Nucleotide ID:NM_172467Re-query CCDS DB by Protein ID:NP_766055Link to BLAST:NP_766055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766055.1 296 Q8BFR1-1 296 100% 0 0

Chromosomal Locations for CCDS 20011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38293022 38293137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38295058 38295319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38297952 38298087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38298864 38299240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCGGACCTCACTCTGTGCGCGTTCCTCACCAAGGTGCTGTGTGCTCACGGCGGCCGCATGTTCCTGC
AGGACCTGCGCGGCCACGTGGAGCTGTCGGAGGCGAAGCTGCGGGCCGTGCTGCGGCGCGCGGGTCCAGA
GCGCTTCCTGCTGCAGGAGGTGGAGCTGCGCGACGGCCCGTGGGACGCAGAGGCCGAGGTGGCGGCGGGC
GAGGGCGCGGGCGCGGGCTCAGGCGGCGGCGCCACGGCCTGCAGGGTGATGGCCGTGTCCTCCGCGCGCC
TCTGCGCCCGCTACCAGCGCGGGGAGTGTCAGGGCTGCGACCAGCTGCACTTGTGTCGCCGCCACATGCT
GGGCAAGTGCCCCCACCGCGACTGCTGGTCTACCTGTTCTCTGTCCCATGATATCCACACACCTATCAAC
GTCCAAGTCCTGAAAAGCCGGGGGCTTTTTGGCCTCAATGAAGGGCAGCTGCGAATCCTGCTTTTGCAGA
ACGACCCCTGCCTTTTCCCAGAGGTCTGTCAGATGTACAACAAAGGTGTCGATGTCCTTTATGGCTACTG
CAGCCTCAAGGATAGATGCAACAAGTTTCACGTGTGCAAATCCTTTGTGCGAGGTGAATGCCCCTTTCAG
CCCTGCAAACGCTCCCACCAGCTCATCCATGCTGCCACCCTCAAGTTGCTAGAGGACCAAGAACTTAGTG
TTTCAAGCGTCGTGAATTTCCAGATAATCTCTGTCTACAGACATAAGAAGTTGCACAAGATGCTTGAAGA
GAAAGACCACTCGGCTTCTACTGAGCAACCACAAGGCCTTGGGAAACAAGGAGCCCTCGGGGCTGTGGAA
GCCAGGCCTTTCCTCCCTGCCCGTGCTCAGTCGCCCAGGAAGCCCCAATAA

Translation (296 aa):
MADLTLCAFLTKVLCAHGGRMFLQDLRGHVELSEAKLRAVLRRAGPERFLLQEVELRDGPWDAEAEVAAG
EGAGAGSGGGATACRVMAVSSARLCARYQRGECQGCDQLHLCRRHMLGKCPHRDCWSTCSLSHDIHTPIN
VQVLKSRGLFGLNEGQLRILLLQNDPCLFPEVCQMYNKGVDVLYGYCSLKDRCNKFHVCKSFVRGECPFQ
PCKRSHQLIHAATLKLLEDQELSVSSVVNFQIISVYRHKKLHKMLEEKDHSASTEQPQGLGKQGALGAVE
ARPFLPARAQSPRKPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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