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Report for CCDS28884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28884.1 Public Mus musculus 17 Sult1c1 23 108 98 CCDS HistoryNCBI Gene:20888Re-query CCDS DB by CCDS ID:28884.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024738.7 ENSMUSP00000024738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024738.7Link to Ensembl Protein Viewer:ENSMUSP00000024738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024738Re-query CCDS DB by Protein ID:ENSMUSP00000024738
Original member Current member NCBI NM_018751.2 NP_061221.2 Accepted alive Link to Nucleotide Sequence:NM_018751.2Link to Protein Sequence:NP_061221.2Re-query CCDS DB by Nucleotide ID:NM_018751Re-query CCDS DB by Protein ID:NP_061221Link to BLAST:NP_061221.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061221.2 304 Q80VR3 304 100% 0 0

Chromosomal Locations for CCDS 28884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 53962072 53962184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53962397 53962577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53963981 53964075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53964632 53964758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53969633 53969730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53971986 53972114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 53973902 53974073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGCCCTTGGAAAAATTGAAAGACCTCCACCTCGATGAACAGAACATGCAGCCAGAAACCAGGGAAGTGA
ATGGGATTCTAATGTCCAAGATGATGAGTGAAAACTGGGACAAAATTTGGAACTTCCAAGCAAAGCCCGA
TGATCTCCTCATTGCAACCTATGCAAAGGCAGGTACCACCTGGACACAGGAAATTGTGGACATGATCCAA
AATGATGGGGATGTTCAAAAGTGCCAGCGGGCCAATACCTATGACCGACACCCTTTCATTGAGTGGACTT
TGCCTCCACCCCTCAACTCAGGTCTGGATCTGGCTAACAAAATGCCTTCACCTAGAACTCTGAAGACTCA
TCTGCCTGTTCAAATGCTTCCACCTTCCTTTTGGAAAGAAAACTCAAAGATTATCTATGTGGCCAGAAAT
GCCAAGGACTGCCTGGTATCTTACTACTATTTCTCAAGAATGAATAAAATGCTGCCTGACCCTGGTACCC
TGGGAGAATACATTGAAACCTTCAAAGCTGGAAAAGTGCTGTGGGGCTCCTGGTATGACCATGTAAAGGG
ATGGTGGGATGTGAAAGACAAACACCGTATTCTGTACCTCTTCTATGAAGACATGAAAGAGGACCCTAAA
AGGGAAATTAAGAAGATAGTAAAATTCCTGGAAAAAGACATTTCAGAGGAAGTTCTAAATAAAATCATCC
ATCACACCTCCTTTGATGTAATGAAGCAGAACCCAATGGCCAACTATACCACTCTACCCTCCAGTATCAT
GGACCACTCTATATCTCCTTTCATGAGAAAAGGGATGCCTGGAGACTGGAAGAACTACTTTACCGTGGCA
CAAAGTGAGGATTTTGATGAAGACTACCGGAAGAAGATGGCAGGGAGCACTATTACCTTCCGCACAGAGA
TCTGA

Translation (304 aa):
MPLEKLKDLHLDEQNMQPETREVNGILMSKMMSENWDKIWNFQAKPDDLLIATYAKAGTTWTQEIVDMIQ
NDGDVQKCQRANTYDRHPFIEWTLPPPLNSGLDLANKMPSPRTLKTHLPVQMLPPSFWKENSKIIYVARN
AKDCLVSYYYFSRMNKMLPDPGTLGEYIETFKAGKVLWGSWYDHVKGWWDVKDKHRILYLFYEDMKEDPK
REIKKIVKFLEKDISEEVLNKIIHHTSFDVMKQNPMANYTTLPSSIMDHSISPFMRKGMPGDWKNYFTVA
QSEDFDEDYRKKMAGSTITFRTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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