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Report for CCDS15574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15574.1 Public Mus musculus 1 Sde2 23 108 98 CCDS HistoryNCBI Gene:208768Re-query CCDS DB by CCDS ID:15574.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038091.7 ENSMUSP00000037890.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038091.7Link to Ensembl Protein Viewer:ENSMUSP00000037890.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038091Re-query CCDS DB by Protein ID:ENSMUSP00000037890
Original member Current member NCBI NM_145943.1 NP_666055.1 Accepted alive Link to Nucleotide Sequence:NM_145943.1Link to Protein Sequence:NP_666055.1Re-query CCDS DB by Nucleotide ID:NM_145943Re-query CCDS DB by Protein ID:NP_666055Link to BLAST:NP_666055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666055.1 448 Q8K1J5 448 100% 0 0

Chromosomal Locations for CCDS 15574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180851173 180851292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180855803 180855920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180858123 180858234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180859901 180860070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180861098 180861218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180862358 180862841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180866072 180866293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGCGGAGGCTGCGGTGGTGGCGTGGGTTCGCGGCCCCGGTACCGTGTGGAAGGCGCTGCCGTGTGCCT
CGGTTGGGTGCTCCGTGCGCGATGTGATCTACCGACACTGCCAGGAACAGGAAGTTCCCGTGGAATGCTT
CTTTGTGACGTGCAATGGAGTCCTCGTTAATGCCGGTGATAAGGTGCAGCATGGAGCCGTGTACAGTTTG
GAGCCCAGGCTTCGTGGGGGGAAAGGAGGTTTTGGGTCTATGCTTCGAGCACTTGGTGCACAGATAGAGA
AGACAACCAATAGAGAAGCCTGCCGGGATCTCAGTGGGAGGAGATTACGAGATGTCAATCATGAGAAAGC
GATGGCTGAGTGGGTAAAACAGCAAGCTGAGCGAGAGGCTGAAAAGGAGCAAAGGCGCCTGGAGAGGCTG
CAGCGAAAGCTTGCCGAGCCTGCACACTGCTTCACCAGTCCCGACTACCAGAGGCAGTGCCATGAGATGG
CTGAGCGTCTGGAGGACTCAGTCCTCAAAGGTATGCAGGCTGCATCCAGCAAGATGGTATCAGCAGAAAT
CACTGAGACTCGGAAACGGCCTAACAAGTCAAAAACGGACCAGGAAACTAGTGCAAAAAAAAGGAAAAGG
AAATGCTTTTGGTTGGGCATGGATGGGCTGGAGGCTGCCGAGGGGTCCAGTACTGGAAGCTCAGAGGACA
GCTCAGAGGATGACAGTGAGGATGCTCCTGGGACTTCGGAGCAGAGCTGCTGTGCTCGGGAAGACGGCAT
TGATGCTGTAGAGGTGGCAGCCGACCGACCTGGCAGTCCTCGGAGCTCGGCCTCTGGTACACACTCTGAG
TCACCTGAAAAGCTTCAGTGCCCCGTGACCGAGCCTGGGCAGGGCATTTTGGAGAACACAGGAACTGAGC
CAGGAGAGACCTCTGACAAGGAGTGCAACGAGAGGAAGACAGTCACAGACCCAGAGGAGACGCCAGCAAG
GAAGGAAACAGAGAGTCATGAGGCCACAGAAAAGGACCAAAAGACAGGAATGTCTGGTGGGGACAGAGCT
GCCATGGTTTTGTCTGGAGAAGACAGGAAAAGTGTCCCTGCTGCTAATCTGGAGGGAAACAACTCAGGAG
ACACAGCTCTTGGTCTGGAAGCGGTGGATCTGTCAGCATTCAGCTCTGCAGCCGAGTTGGAGTCGCTGGG
TTTGGAGAGGCTCAAGTGTGAACTGATGGTCCTTGGACTGAAGTGTGGGGGGACCCTGCAGGAGCGCGCA
GCCAGGCTCTTCTCTGTCAGAGGCCTCACAAAGGAACTCATTGACCCAGCTTTATTTGCCAAGCCTTCCA
AGGGGAAGAAGAAGTGA

Translation (448 aa):
MAEAAVVAWVRGPGTVWKALPCASVGCSVRDVIYRHCQEQEVPVECFFVTCNGVLVNAGDKVQHGAVYSL
EPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQRRLERL
QRKLAEPAHCFTSPDYQRQCHEMAERLEDSVLKGMQAASSKMVSAEITETRKRPNKSKTDQETSAKKRKR
KCFWLGMDGLEAAEGSSTGSSEDSSEDDSEDAPGTSEQSCCAREDGIDAVEVAADRPGSPRSSASGTHSE
SPEKLQCPVTEPGQGILENTGTEPGETSDKECNERKTVTDPEETPARKETESHEATEKDQKTGMSGGDRA
AMVLSGEDRKSVPAANLEGNNSGDTALGLEAVDLSAFSSAAELESLGLERLKCELMVLGLKCGGTLQERA
ARLFSVRGLTKELIDPALFAKPSKGKKK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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