NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17277.1 Public Mus musculus 3 Eif5a2 23 108 98 CCDS HistoryNCBI Gene:208691Re-query CCDS DB by CCDS ID:17277.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060500.8 ENSMUSP00000050289.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060500.8Link to Ensembl Protein Viewer:ENSMUSP00000050289.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060500Re-query CCDS DB by Protein ID:ENSMUSP00000050289
Original member Current member NCBI NM_177586.6 NP_808254.1 Accepted alive Link to Nucleotide Sequence:NM_177586.6Link to Protein Sequence:NP_808254.1Re-query CCDS DB by Nucleotide ID:NM_177586Re-query CCDS DB by Protein ID:NP_808254Link to BLAST:NP_808254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808254.1 153 Q8BGY2 153 100% 0 0

Chromosomal Locations for CCDS 17277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 28782052 28782216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28782728 28782832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28793685 28793816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28794396 28794455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCAGACGAAATTGATTTCACTACTGGAGATGCAGGGGCTTCCAGCACTTATCCTATGCAGTGCTCAG
CCCTGCGCAAAAACGGCTTCGTCGTGCTCAAAGGGCGACCATGCAAAATCGTGGAGATGTCAACTTCCAA
GACTGGGAAGCATGGTCATGCCAAGGTACACCTTGTTGGAATTGACATTTTCACTGGCAAAAAATATGAA
GACATTTGTCCTTCTACTCACAACATGGATGTTCCAAATATTAAGAGAAACGATTATCAACTCATATGCA
TTCAGGATGGTTACCTTTCCCTGCTGACAGAAACTGGCGAAGTCCGTGAAGATCTTAAGCTGCCAGAAGG
TGAACTGGGCAAAGAAATAGAAGGGAAATACAATGCAGGTGAAGATGTGCAGGTGTCTGTCATGTGTGCC
ATGAGTGAAGAATACGCTGTAGCCATAAAGCCCTGCAAATAG

Translation (153 aa):
MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYE
DICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMCA
MSEEYAVAIKPCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH