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Report for CCDS77433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77433.1 Public Homo sapiens 2 FOXI3 24 110 108 CCDS HistoryNCBI Gene:344167Re-query CCDS DB by CCDS ID:77433.1Re-query CCDS DB by GeneID:344167See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 77433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428390.3 ENSP00000478384.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000428390.3Link to Ensembl Protein Viewer:ENSP00000478384.2Re-query CCDS DB by Nucleotide ID:ENST00000428390Re-query CCDS DB by Protein ID:ENSP00000478384
Original member Current member NCBI NM_001135649.3 NP_001129121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135649.3Link to Protein Sequence:NP_001129121.1Re-query CCDS DB by Nucleotide ID:NM_001135649Re-query CCDS DB by Protein ID:NP_001129121Link to BLAST:NP_001129121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129121.1 420 A8MTJ6 420 100% 0 0

Chromosomal Locations for CCDS 77433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88448207 88448829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88451896 88452535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCCCTCTACTGCGGCGACAACTTCGGAGTGTATTCGCAGCCCGGCCTGCCCCCGCCCGCCGCCACCG
CCGCCGCCCCGGGCGCCCCCCCGGCAGCCAGGGCGCCTTACGGGCTGGCCGACTACGCCGCGCCGCCGGC
CGCCGCCGCCAACCCCTACCTGTGGCTCAACGGGCCCGGCGTGGGAGGCCCGCCCTCCGCCGCCGCCGCA
GCCGCCGCCGCGTACCTGGGCGCTCCGCCGCCGCCGCCGCCCCCCGGGGCCGCGGCCGGGCCCTTTCTGC
AGCCACCGCCTGCCGCCGGCACCTTCGGCTGCTCTCAGCGGCCCTTCGCGCAGCCCGCGCCCGCCGCGCC
CGCCTCGCCCGCCGCGCCCGCGGGGCCCGGGGAGCTGGGCTGGCTGTCCATGGCCAGCCGCGAGGACCTG
ATGAAGATGGTGCGGCCGCCCTACTCGTATTCGGCGCTCATCGCCATGGCCATTCAGAGCGCGCCCGAGC
GCAAACTCACTCTCAGCCACATCTACCAGTTCGTCGCCGATAGCTTCCCCTTCTACCAGCGCAGCAAGGC
CGGCTGGCAGAACTCCATCCGCCACAACCTGTCGCTCAACGACTGCTTCAAGAAGGTGCCCCGCGACGAG
GACGACCCAGGAAAGGGTAATTATTGGACTCTTGATCCGAACTGCGAGAAAATGTTTGACAATGGGAACT
TCCGTCGGAAGCGAAAGCGCCGCTCTGAGGCCAGCAATGGCTCCACAGTGGCTGCTGGGACATCAAAGTC
CGAAGAAGGGCTCTCCTCAGGATTGGGGTCTGGAGTGGGTGGGAAGCCAGAAGAAGAGAGCCCCTCCACT
CTGCTGAGGCCTTCCCACTCCCCAGAGCCTCCGGAGGGCACCAAGAGTACTGCCTCATCTCCTGGAGGAC
CCATGCTCACCTCCACCCCTTGTCTCAACACTTTCTTCAGCAGCCTCAGCTCCTTGAGTGTCAGCAGCAG
TGTGAGTACCCAGCGGGCTCTCCCTGGCAGCCGCCACCTAGGGATCCAGGGGGCCCAGCTGCCCTCCAGC
GGCGTGTTCTCCCCGACCTCCATCTCAGAGGCCTCAGCAGACACCTTGCAACTGAGCAATAGCACCAGCA
ATAGCACCGGCCAGAGATCTTCCTATTACAGCCCTTTCCCTGCCAGCACCAGCGGGGGGCAAAGCAGCCC
CTTCAGCAGCCCTTTCCACAACTTTAGCATGGTGAACAGCCTCATCTACCCCCGAGAGGGCTCCGAGGTG
TAG

Translation (420 aa):
MALYCGDNFGVYSQPGLPPPAATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGPGVGGPPSAAAA
AAAAYLGAPPPPPPPGAAAGPFLQPPPAAGTFGCSQRPFAQPAPAAPASPAAPAGPGELGWLSMASREDL
MKMVRPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFKKVPRDE
DDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSEASNGSTVAAGTSKSEEGLSSGLGSGVGGKPEEESPST
LLRPSHSPEPPEGTKSTASSPGGPMLTSTPCLNTFFSSLSSLSVSSSVSTQRALPGSRHLGIQGAQLPSS
GVFSPTSISEASADTLQLSNSTSNSTGQRSSYYSPFPASTSGGQSSPFSSPFHNFSMVNSLIYPREGSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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