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Report for CCDS28994.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28994.2 Public Mus musculus 17 Pkdcc 23 108 98 CCDS HistoryNCBI Gene:106522Re-query CCDS DB by CCDS ID:28994.2Re-query CCDS DB by GeneID:106522See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28994.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28994.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170794.7 ENSMUSP00000129238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170794.7Link to Ensembl Protein Viewer:ENSMUSP00000129238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170794Re-query CCDS DB by Protein ID:ENSMUSP00000129238
Original member NCBI NM_134117.2 NP_598878.2 Updated not alive Link to Nucleotide Sequence:NM_134117.2Link to Protein Sequence:NP_598878.2Re-query CCDS DB by Nucleotide ID:NM_134117Re-query CCDS DB by Protein ID:NP_598878
Current member NCBI NM_134117.3 NP_598878.2 Accepted alive Link to Nucleotide Sequence:NM_134117.3Link to Protein Sequence:NP_598878.2Re-query CCDS DB by Nucleotide ID:NM_134117Re-query CCDS DB by Protein ID:NP_598878Link to BLAST:NP_598878.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598878.2 492 Q5RJI4-1 492 100% 0 0

Chromosomal Locations for CCDS 28994.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83215466 83216104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83220034 83220156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83220966 83221237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83221790 83221869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83222126 83222230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83223783 83223956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83224192 83224277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGCGGCGCCGGCGGGCGGCCGTGGCCGCTGGTTTCTGCGCCTCCTTCCTGCTGGGCTCCGTCCTCAACG
TGCTCTTCGCACCGGGCTCGGAGCCTCCGCGGCCAGGCCAGTCCCCGGGGTCCTCGGCAGCCCCGGGCCC
GGGCCGTCGCGGGGGCCGTGGGGAGCTGGCCCGGCAGATCCGGGAGCGCTACGAGGAGGTGCAGCGCTAT
TCCCGCGGGGGGCCGGGGCCGGGAGCGGGCCGGCCAGAGCGGCGGCGCCTGATGGACCTGGCTCCGGGCG
GGCCGGGCCTGCAGCGTCCCCGGCCCCCGCGGGTCCGGTCCCCGCCCGACGGCGCTCCGGGCTGGCCCCC
TGCTCCCGGCCCGGGCTCCCCCGGCCCGGGCCCGCGCCTAGGCTGCGCCGCGCTCCGCAACGTGTCTGGC
GCGCAGTACGTGGGCTCAGGCTACACTAAGGCTGTGTACCGGGTCCGCCTGCCCGGCGGCGCCGCGGTGG
CGCTTAAAGCAGTGGACTTCAGCGGCCACGATCTGGGCAGCTGCGTGCGCGAGTTCGGGGCGCGAAGGGG
CTGCTATCGCCTGGCGGCCCACAAGCTGCTCAAAGAGATGGTGCTGCTGGAGCGGCTGCGGCACCCCAAC
GTGCTGCAGCTCTATGGCTATTGCTACCAGGACAGTGAGGGCATCCCAGACACGCTGACCACCATCACAG
AGCTGGGTGCCCCTGTGGAGATGATCCAGCTGTTGCAGACTTCCTGGGAGGATCGATTCCGAATCTGCCT
CAGCCTTGGCCGCCTCCTCCACCACCTGGCCCACTCCCCGCTGGGCTCGGTCACCCTGCTTGACTTCCGC
CCTCGGCAGTTTGTGCTAGTGAACGGGGAGCTGAAAGTGACAGACCTGGATGATGCCCGCGTGGAAGAGA
CACCGTGCACCAGCAGTGCCGACTGCACGCTAGAGTTTCCAGCCAGGAACTTCAGCCTGCCCTGCTCGGC
CCAGGGCTGGTGCGAGGGCATGAATGAGAAACGGAACCTCTACAATGCCTACAGGTTCTTCTTCACATAC
CTCCTGCCACACAGTGCCCCGCCTTCCCTCCGACCTCTCCTGGATAGCATCGTCAATGCCACGGGAGAGC
TCGCCTGGGGGGTGGATGAGACCCTGGCCCAGCTGGAGACAGCGCTACACTTGTTCCGAAGTGGGCAGTA
CCTGCAGAACTCTACAAGCAGCAGGGCTGAGTACCAGCGCATCCCGGACAGTGCCATCACACAGGAGGAC
TATCGCTGCTGGCCATCCTATCACCACGGCGGCTGCCTCCTGTCCGTGTTCAACCTGGCTGAGGCTATAG
ATGTCTGTGAGAGCCATGCTCAGTGTCGTGCCTTTGTGGTCACCAACCAGACCACCTGGACAGGTCGGAA
GCTGGTCTTTTTTAAGACTGGATGGAACCAAGTGGTCCCTGATGCCGGCAAGACCACATATGTGAAGGCC
CCTGGTTGA

Translation (492 aa):
MRRRRAAVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSPGSSAAPGPGRRGGRGELARQIRERYEEVQRY
SRGGPGPGAGRPERRRLMDLAPGGPGLQRPRPPRVRSPPDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG
AQYVGSGYTKAVYRVRLPGGAAVALKAVDFSGHDLGSCVREFGARRGCYRLAAHKLLKEMVLLERLRHPN
VLQLYGYCYQDSEGIPDTLTTITELGAPVEMIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFR
PRQFVLVNGELKVTDLDDARVEETPCTSSADCTLEFPARNFSLPCSAQGWCEGMNEKRNLYNAYRFFFTY
LLPHSAPPSLRPLLDSIVNATGELAWGVDETLAQLETALHLFRSGQYLQNSTSSRAEYQRIPDSAITQED
YRCWPSYHHGGCLLSVFNLAEAIDVCESHAQCRAFVVTNQTTWTGRKLVFFKTGWNQVVPDAGKTTYVKA
PG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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