NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23616.1 Public Mus musculus 9 Exog 23 108 98 CCDS HistoryNCBI Gene:208194Re-query CCDS DB by CCDS ID:23616.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035094.13 ENSMUSP00000035094.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035094.13Link to Ensembl Protein Viewer:ENSMUSP00000035094.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035094Re-query CCDS DB by Protein ID:ENSMUSP00000035094
Original member Current member NCBI NM_172456.4 NP_766044.1 Accepted alive Link to Nucleotide Sequence:NM_172456.4Link to Protein Sequence:NP_766044.1Re-query CCDS DB by Nucleotide ID:NM_172456Re-query CCDS DB by Protein ID:NP_766044Link to BLAST:NP_766044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766044.1 368 Q8C163 368 100% 0 0

Chromosomal Locations for CCDS 23616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119444988 119445150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119446949 119447098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119448389 119448528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119449778 119449854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119452228 119452342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119462376 119462837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCTGCAAAGAGCTTCGCTTCCCGTCTCAGGGACTCGCGGCGATTTCTGAATGGCTTCTTGGCCGGGG
CTGTAGTGGGCGCCGCGGGAGCGGGGCTGACGGCGCTGCAGTTTTTCCGGCGTCCGGACGCGGAATCCGC
GAAGCTGGCGAGGCAGCCACACGAATCTGCAGAAGAAGCTGTCTTGGAACAGTTTGGGTTTCCTTTAGCT
GGAACAGAGACGAGGCGTTACACTAACCACGCCCTGTCTTACGATCAGGCAAAACGGGTGCCCAGATGGG
TTCTTGAGCATATATCCAAGGACAAGATCATCGGTGACGCTGACAGAAAGCATTGTAAATTCAAGCCGGA
TCCTTCTGTCCCTTCAGCCTTCAGCGCCCTCAATGAAGACTATATCGGGAGTGGCTGGTCACGAGGCCAC
ATGGCCCCGGCAGGAAATAACAAGTTTTCCAGTGAAGCCATGGCAGAAACCTTTTACCTTTCTAATATCG
TGCCTCAGAATTTTGATAATAACTCCGGCTACTGGAACAGAATAGAAATGTATTGTCGTGAGCTGACGGA
GAGATTTGAAGATGTTTGGATAGTATCAGGACCTTTAACCTTACCTCATACTAGGAATGATGGAACGAAA
ACAGTTAGTTACCAGGTGATTGGTGAGGACAACGTGGCCGTCCCCTCGCACCTTTACAAGGTGATCCTGG
CTCGCAGAAGCCCGGAATCTACGGAGCCGCTGGCGCTGGGGGCCTTTGTGGTGCCAAATAAAGCCATTGG
GTTCCAGTCCCAGTTATCCGAGTTCCAGGTGAGCCTCCATGACCTGGAGAAGATGTCAGGTCTGGTGTTT
TTCCCCCGTCTGGATAGAAGCAGGGACATCCGGAATATTTGCTCTGTGGACACCTGCAAGCTCCTGGGTT
TCCAGGAATTCACTCTGTACCTGAGCACGAGGAAGATTGATGGAGCCCGGTCTGTGGCCAGACTGGAGAA
GGTTCTGGAAGCTTTGAAGAGCTCAGGGGTGGAACCTGACGATTACTTCCTGAGTCGCTATGAGAAAAAG
CTGGAGGAACTGAAGGCTAAGGAGCAAAAGGACGCCCAGCTGGAAAAGCAGTCCTAG

Translation (368 aa):
MAAKSFASRLRDSRRFLNGFLAGAVVGAAGAGLTALQFFRRPDAESAKLARQPHESAEEAVLEQFGFPLA
GTETRRYTNHALSYDQAKRVPRWVLEHISKDKIIGDADRKHCKFKPDPSVPSAFSALNEDYIGSGWSRGH
MAPAGNNKFSSEAMAETFYLSNIVPQNFDNNSGYWNRIEMYCRELTERFEDVWIVSGPLTLPHTRNDGTK
TVSYQVIGEDNVAVPSHLYKVILARRSPESTEPLALGAFVVPNKAIGFQSQLSEFQVSLHDLEKMSGLVF
FPRLDRSRDIRNICSVDTCKLLGFQEFTLYLSTRKIDGARSVARLEKVLEALKSSGVEPDDYFLSRYEKK
LEELKAKEQKDAQLEKQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH