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Report for CCDS46287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46287.1 Public Homo sapiens 2 CLHC1 24 110 108 CCDS HistoryNCBI Gene:130162Re-query CCDS DB by CCDS ID:46287.1Re-query CCDS DB by GeneID:130162See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406076.5 ENSP00000385512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406076.5Link to Ensembl Protein Viewer:ENSP00000385512.1Re-query CCDS DB by Nucleotide ID:ENST00000406076Re-query CCDS DB by Protein ID:ENSP00000385512
Original member Current member NCBI NM_001135598.2 NP_001129070.1 Accepted alive Link to Nucleotide Sequence:NM_001135598.2Link to Protein Sequence:NP_001129070.1Re-query CCDS DB by Nucleotide ID:NM_001135598Re-query CCDS DB by Protein ID:NP_001129070Link to BLAST:NP_001129070.1
Original member Current member NCBI NM_001353781.2 NP_001340710.1 Accepted alive Link to Nucleotide Sequence:NM_001353781.2Link to Protein Sequence:NP_001340710.1Re-query CCDS DB by Nucleotide ID:NM_001353781Re-query CCDS DB by Protein ID:NP_001340710Link to BLAST:NP_001340710.1
Original member Current member NCBI NM_001353784.2 NP_001340713.1 Accepted alive Link to Nucleotide Sequence:NM_001353784.2Link to Protein Sequence:NP_001340713.1Re-query CCDS DB by Nucleotide ID:NM_001353784Re-query CCDS DB by Protein ID:NP_001340713Link to BLAST:NP_001340713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129070.1 464 Q8NHS4-2 464 100% 0 0
NP_001340710.1 464 Q8NHS4-2 464 100% 0 0
NP_001340713.1 464 Q8NHS4-2 464 100% 0 0

Chromosomal Locations for CCDS 46287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 55175790 55175986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55177602 55177781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55180510 55180712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55181570 55181744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55206270 55206376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55208626 55208710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55209404 55209516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55209630 55209831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55212673 55212805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGAGGATTATCGAAAGTAATTCCTCGAAGATTCAATCTCAAATAGATCACATCAAGCAGTGTAGGGCAG
AGTATGACACAAAAGAAGTAAAATATTGTACTTTCTCCAAAGATCCTTCAAAACCTATTCCAGGCATGAC
TCTTCAAGAATCCATGAATCTAGATGCTCTCACTAAATACATGAAACATCTTGAAGATAAATATGCAGAA
ATTAAACAAGCTATGTTGATAAAATATGTGCCAGCTCAGAGGAAGGCTGATTTAGATGAAGAAATGATTG
TGTTATTAAAACGGCGAGATGTAGCTGAAAATCTGAACAAAAAATTGCAGTTTTGTCATCAAAGACTGCA
GATAATTTCACAGGCACTTAGTTCATGGGTAAAATCTGATATGAGCAGCCCATTTCAAGACTTTGTGGAG
CAAATTCAGAAAACCAAATATTTACAAGGTGACCAAGGCATTGTTGAAGAACTAATGGAAGATGATCCAC
GCAGGGCAAAAGAAGCTGAAATTATGCTTCACTACATTGAAAGGTTTAATGAGTTAATCTCACTTGGTGA
ATATGAAAAGGCAGCTTGTTATGCAGCAAACAGTCCTAGAAGAATTCTTCGAAACATTGGTACAATGAAT
ACATTTAAGGCTGTTGGAAAAATTAGAGGAAAGCCTCTTCCATTACTCTTATTTTTTGAGGCCCTCTTTA
TCACAAGTCATGCTTTTCCATGTCCTGTTGATGCAGCTCTAACCCTGGAAGGAATCAAATGTGGATTATC
AGAAAAACGGTTAGATTTAGTTACCAATTGGGTTACACAGGAAAGACTGACATTTTCTGAGGAGGCTGGG
GATGTGATTTGTGATTATGGGGAGCAGGATACTTATAACAAGGCCAAGTGCCTGGCTTTAGCTCAGATTG
TCTACAGTGAATGTGGCCTGCACAAGAAAGCTATTCTTTGCTTGTGTAAACAGGGTCAGACTCATAGGGT
CATGGAGTACATACAGCAGTTGAAGGACTTTACTACCGATGACCTGTTGCAGCTATTAATGTCATGTCCC
CAAGTTGAATTAATTCAGTGTCTCACTAAAGAGTTGAATGAGAAACAACCATCTTTATCTTTTGGTCTTG
CTATACTTCATCTGTTCTCTGCAGACATGAAAAAAGTTGGCATTAAGCTACTTCAAGAAATCAATAAAGG
TGGGATAGATGCAGTAGAAAGTCTTATGATAAATGATTCCTTTTGCTCCATAGAAAAGTGGCAAGAAGTG
GCAAATATATGTTCACAGAATGGCTTTGACAAATTATCTAATGACATCACGTCTATTCTTCGATCTCAGG
CTGCAGTTACAGAAATTTCTGAAGAGGATGACGCAGTCAACCTAATGGAACATGTGTTTTGGTAG

Translation (464 aa):
MRIIESNSSKIQSQIDHIKQCRAEYDTKEVKYCTFSKDPSKPIPGMTLQESMNLDALTKYMKHLEDKYAE
IKQAMLIKYVPAQRKADLDEEMIVLLKRRDVAENLNKKLQFCHQRLQIISQALSSWVKSDMSSPFQDFVE
QIQKTKYLQGDQGIVEELMEDDPRRAKEAEIMLHYIERFNELISLGEYEKAACYAANSPRRILRNIGTMN
TFKAVGKIRGKPLPLLLFFEALFITSHAFPCPVDAALTLEGIKCGLSEKRLDLVTNWVTQERLTFSEEAG
DVICDYGEQDTYNKAKCLALAQIVYSECGLHKKAILCLCKQGQTHRVMEYIQQLKDFTTDDLLQLLMSCP
QVELIQCLTKELNEKQPSLSFGLAILHLFSADMKKVGIKLLQEINKGGIDAVESLMINDSFCSIEKWQEV
ANICSQNGFDKLSNDITSILRSQAAVTEISEEDDAVNLMEHVFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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