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Report for CCDS19075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19075.1 Public Mus musculus 5 Cfap69 23 108 98 CCDS HistoryNCBI Gene:207686Re-query CCDS DB by CCDS ID:19075.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054865.12 ENSMUSP00000053206.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054865.12Link to Ensembl Protein Viewer:ENSMUSP00000053206.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054865Re-query CCDS DB by Protein ID:ENSMUSP00000053206
Original member Current member NCBI NM_172447.2 NP_766035.1 Accepted alive Link to Nucleotide Sequence:NM_172447.2Link to Protein Sequence:NP_766035.1Re-query CCDS DB by Nucleotide ID:NM_172447Re-query CCDS DB by Protein ID:NP_766035Link to BLAST:NP_766035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766035.1 942 Q8BH53-1 942 100% 0 0

Chromosomal Locations for CCDS 19075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 5581196 5581366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5581904 5582008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5582442 5582528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5584651 5584848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5586356 5586432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5587141 5587278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5589120 5589312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5593772 5593853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5595921 5596039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5604274 5604392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5613686 5613850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5617169 5617385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5618948 5619069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5619167 5619215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5621920 5622043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5625750 5625927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5626009 5626158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5640129 5640227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5644424 5644500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5646936 5647045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5649790 5649855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5657788 5657847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5663908 5664030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGTCCACCGCGGAGGCCTCGGCCACCACGGCCGACGCCGCCGAGGCGGGCGGCAGGACGAAGACCGGCA
GTCCCCGCACAATCCCGGTGTTTGGGGTGGCGATCCCGGATGGGGAGATGCAGGGTATTTTCAAGCCTAT
GGACCTTAATCGTATCATCAAAGTCCTTGAAGAGGAGGATAAGGATGTCTCAGAAGAAAAACAACTTAAT
TATATCAAGAAACTGATACACTGCTATCAGAATGGATTTCCTCTAAGAGATTTGGCACAGATATTTAAAA
TTCTGAGTCTGTGTGCAGAAAAAATTGAAAAGCAGCCCTGTTTTGTAGAACCTGCATCTGACATCATAAA
ATTATGTGGCTTGCCATTTTTGAAAAAGAAAGTATCGGATGAAATAACTTACACTGAAGATACTGCTAAT
TCATTTGCACTTCTGGGTGAGTTAATGAAAATACCAAGTTCTGCATTAAGGATACAAATTTGTAAATGTA
TTGTTGACTTCTATCATGCAGAACCATTAAAGAAACATATTCCAGGCTACCAGCAGGTGAGTTCATCCTA
CAAGATTAAAATGGTAGAGGTCGGTGGCTTGGCGAAGGCAATGGTCCAGTCGGCACTCCTGCTTGAGAAT
CAGCTTGTCGAGAAACTCTGGGTTCTGAAAGTCCTGCAGCATCTCTCTACTTCTGGAGTTAATTGCACTT
TAATGGTGAAAGCCCAAGCAGCCAGCGGAATCTGTGCTCACCTCAATGACCCAGATCCCTCAGGACAGCT
TTTATTTCGTTCATCAGAAGTACTTTGGAATTTACTGGAAAAATCTTCAAAGGAGGAAATTATACAACAG
CTTAGTAACTTGGAATGCCTGCTGGCTTTGAAAGAAGTATTTAAAAACCTCTTTGTGAGGGGGCATAGTC
ACTATGAGCGTCAGCTTAGAAATGATATATTAGTTATCACCACAATTATAGCTCAGAACCCTGGAGCACC
GATGATTGAATGTGGCTTTACCAGGGATTTGATACTATTTGCAACTTTTAATGAAGTTAAAAGTCAAAAC
CCCTTGGTAAAAAGTCTTAAGCTTTTTAATTGCTATGAAGATTTTGAGCTGAAGAAATTGTTATTCAATA
TAATTGTGATCTTATGTAAAGATTTAGCTACTGTACAGCTATTAATCGATGGCAAAGTTATTTTGGCTTT
GTTTACCTATGTGAAAAAGCCTGAGAGACTCAAGATCATGGAGTGGTCTGCAGCACAGTATGAAGAACTA
CAACTGCATGCGATTGCCACCTTGTCCTCTGTGGCTCCTTTGTTAATAGAAGAGTATATGTCATGCCACG
GCAATTCTCGGATCCTTGCATTTCTGGAGTGGTGTGGGCATGAGGATTCCTACTTCATTCATGGTAACAG
TTTCCATGGTACAGGCGGCCGTGGAAACAAGTTCGCCCAGATGCGTTACACTCTACGGCTCCTCAGAGCC
ATGGTTTATCTGGAAGATGAGACTGTGAACAAGGACCTTTGTGAGAGAGGGGTTATTCATCAACTGATAG
AAATTTTTAAAACTATGATGAGCAGACCTGCTGAGAAGGAAGAGGCCATTGCCTTAGAAATCCAGTCTGA
CACATTACTTATTCTGTCAGGTCTTTGTGAAAATTATATCCAAAGGAAGGAAATGTTTGGTACTGAAGGA
GTTGACATAGTTCTTCATGTAATGAAAACAGACCCCAAGAATTTACAGAGGGGTTTAGGCTACAATGTCC
TTCTTTTCAGTACGTTAGACAGCATTTGGTGCTGCATTTTGGGATGTTATGATTCTGAAGATTATTTTCT
TGAAAAGGAAGGGATTTTTCTCCTTTTGGATATACTAGCATTGAACCAAAAAAAATTCTGTAATCTGATT
CTTGGAATAATGGTTGAATTTTGTGATAATCCCAAAACTTCTGCTCATGTCAATGCTTGGCGTGGGAAGA
AAGACCTGACTGCTGCCAGCCTTTTAATTAAACTGTGGAGAAAAGAGGAAAAGGAGCTAGGAGTAAAACG
TGACAGGAACGGCAAGATTGTTGATACAAAGAGACCTCTATTTACTAGTTTTCAAGAAGAACAAAAGACC
ATGCCCCTTCCTGCTAACTGCCCATCTATTGCAGTTATGGATGTTGCTGAAAATATCAGAGCAAAAATTT
ATGCTGTGTTGGATAAACTAGATTTTGAAAACTTACCGGGCTTATCTGCCGAAGATTTTGTCACCCTCTG
TATAATACATAGATACTTTGATTTTAAAATTGGAGAAATATGGAATGAAGTATCTGAAGAAATAAAGCTG
GAAAAGCTAAGACTAGTCACAACAGATGAAAAATCTTTGAACTCCATTATAGCAGCAACAGAAAATATTG
GAAAGATGGTTGCGTCCTTGCAAAGTGAGATGATTGAAAACCAAGCCCTTCAGGATGTGCAGAATGAACA
AAGAGTGTATGCAAAAATACAAGCTACACATAAGCAGAGAGAGCAGGCTAACAAGTCATGGGAAAACTTC
TTGGCTAGGACATCAAATGCTAAAACATTAAAGAAAGCAAAGAAGCTTCAAGAAAAGGCTATAGAATCCT
CCAGATATACTGAACGACCACAGAATGCAACATTCCACCAAACAGTTATTAAAGGTCTTAACACAACGGT
GCCTTCGGGTCGGGTGGTGACAGTGCAAAGCACACCTACCCGGCTACTGGGAGGACCTCTGGCTGACACA
GACATCGCTCTGAAAAAACTGCCTATTCGAGGAGGGGCCTTGCAGCGGGTGAAAGTGAAGCCACCACTGA
ATGATCCTAAAAAGAGCATCCCTACATGA

Translation (942 aa):
MSTAEASATTADAAEAGGRTKTGSPRTIPVFGVAIPDGEMQGIFKPMDLNRIIKVLEEEDKDVSEEKQLN
YIKKLIHCYQNGFPLRDLAQIFKILSLCAEKIEKQPCFVEPASDIIKLCGLPFLKKKVSDEITYTEDTAN
SFALLGELMKIPSSALRIQICKCIVDFYHAEPLKKHIPGYQQVSSSYKIKMVEVGGLAKAMVQSALLLEN
QLVEKLWVLKVLQHLSTSGVNCTLMVKAQAASGICAHLNDPDPSGQLLFRSSEVLWNLLEKSSKEEIIQQ
LSNLECLLALKEVFKNLFVRGHSHYERQLRNDILVITTIIAQNPGAPMIECGFTRDLILFATFNEVKSQN
PLVKSLKLFNCYEDFELKKLLFNIIVILCKDLATVQLLIDGKVILALFTYVKKPERLKIMEWSAAQYEEL
QLHAIATLSSVAPLLIEEYMSCHGNSRILAFLEWCGHEDSYFIHGNSFHGTGGRGNKFAQMRYTLRLLRA
MVYLEDETVNKDLCERGVIHQLIEIFKTMMSRPAEKEEAIALEIQSDTLLILSGLCENYIQRKEMFGTEG
VDIVLHVMKTDPKNLQRGLGYNVLLFSTLDSIWCCILGCYDSEDYFLEKEGIFLLLDILALNQKKFCNLI
LGIMVEFCDNPKTSAHVNAWRGKKDLTAASLLIKLWRKEEKELGVKRDRNGKIVDTKRPLFTSFQEEQKT
MPLPANCPSIAVMDVAENIRAKIYAVLDKLDFENLPGLSAEDFVTLCIIHRYFDFKIGEIWNEVSEEIKL
EKLRLVTTDEKSLNSIIAATENIGKMVASLQSEMIENQALQDVQNEQRVYAKIQATHKQREQANKSWENF
LARTSNAKTLKKAKKLQEKAIESSRYTERPQNATFHQTVIKGLNTTVPSGRVVTVQSTPTRLLGGPLADT
DIALKKLPIRGGALQRVKVKPPLNDPKKSIPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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