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Report for CCDS38118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38118.1 Public Mus musculus 2 Strbp 23 108 98 CCDS HistoryNCBI Gene:20744Re-query CCDS DB by CCDS ID:38118.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028279.9 ENSMUSP00000028279.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028279.9Link to Ensembl Protein Viewer:ENSMUSP00000028279.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028279Re-query CCDS DB by Protein ID:ENSMUSP00000028279
Original member Current member EBI ENSMUST00000072186.11 ENSMUSP00000072047.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072186.11Link to Ensembl Protein Viewer:ENSMUSP00000072047.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072186Re-query CCDS DB by Protein ID:ENSMUSP00000072047
Original member Current member NCBI NM_001355259.1 NP_001342188.1 Accepted alive Link to Nucleotide Sequence:NM_001355259.1Link to Protein Sequence:NP_001342188.1Re-query CCDS DB by Nucleotide ID:NM_001355259Re-query CCDS DB by Protein ID:NP_001342188Link to BLAST:NP_001342188.1
Original member Current member NCBI NM_009261.4 NP_033287.2 Accepted alive Link to Nucleotide Sequence:NM_009261.4Link to Protein Sequence:NP_033287.2Re-query CCDS DB by Nucleotide ID:NM_009261Re-query CCDS DB by Protein ID:NP_033287Link to BLAST:NP_033287.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342188.1 672 Q91WM1-1 672 100% 0 0
NP_033287.2 672 Q91WM1-1 672 100% 0 0

Chromosomal Locations for CCDS 38118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37584030 37584106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37586510 37586554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37590657 37590780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37596704 37596844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37599121 37599255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37600745 37600903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37602935 37603134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37603922 37604014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37624173 37624284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37624493 37624590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37625178 37625289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37626482 37626577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37627435 37627526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37635424 37635568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37640851 37641016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37645471 37645691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37647116 37647118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCAT
CTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGA
TTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAACAGAAGTAAAGAAAGATGAAGCTGTG
GAAAACTATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAG
GCTTGCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCT
GTTAAATACAGTTAAAGATAACCTTCCTATTCAGATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAA
CAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATAC
TTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCC
GGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAGGCA
AGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCA
CATGGGCACCATTGAAAGGATGGCCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACC
TTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTGGTGGC
CCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTAAGCTATATGACCACTCAGCAAAAAG
AAGATATTACCCATAGTGCACAGCATGCACTTAGACTATCAGCCTTTGGCCAGATTTATAAAGTGCTGGA
GATGGACCCTCTTCCGTCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCT
GGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTGGGGGATGATAAAGATCCCAACAAGAAGATGA
AACGAAACTTAAGGAAAATTCTAGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCA
GATCAGGCCCGGGCTTCAGTATAAGCTTTTGTCACAATCTGGCCCGGTCCATGCCCCAGTCTTCACAATG
TCTGTAGATGTGGATGGCACAACATATGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGG
CAGTGAAGGTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATCAGTTCCGA
TGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTCT
ACAACTGAGACCTCCAGTACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATC
CTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAATATGAACTCATCTCAGAAACTGGTGGAAGCCA
TGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAA
GTGGCCAAGGCAAGTGCAGCACTAGCTGCCCTGGAGAAGCTGTTTTCTGGACCCAATGCGGCAAATAATA
AGAAAAAGAAGATCATTCCTCAGGCAAAAGGTGTTGTGAATACAGCAGTATCTGCGGCAGTCCAGGCAGT
TCGGGGCAGAGGAAGAGGAACTCTGACAAGGGGAGCATTCGTGGGGGCTACAGCAGCTCCTGGATATATA
GCTCCAGGTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAGAGAATGG
TTCTGTTACCCGTTATGAAATTCCCAACATATCCTGTTCCCCACTACTCATTCTTTTAG

Translation (672 aa):
MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEVKKDEAV
ENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVE
QCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDRQKCLNALASLRHAKWFQA
RANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGILLPGG
PGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGA
GSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTM
SVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFDADIECISSDEKSDNESKNDTVSSNSSNNTGNS
TTETSSTLEVRTQGPILTASGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKK
VAKASAALAALEKLFSGPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYI
APGYGTPYGYSTAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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