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Report for CCDS15262.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15262.2 Reviewed, update pending Mus musculus 1 Il24 23 108 98 CCDS HistoryNCBI Gene:93672Re-query CCDS DB by CCDS ID:15262.2Re-query CCDS DB by GeneID:93672See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15262.2
The coding region was updated to begin from a downstream start codon based on currently available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15262.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121040.7 ENSMUSP00000113064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121040.7Link to Ensembl Protein Viewer:ENSMUSP00000113064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121040Re-query CCDS DB by Protein ID:ENSMUSP00000113064
Original member NCBI NM_053095.2 NP_444325.2 Updated not alive Link to Nucleotide Sequence:NM_053095.2Link to Protein Sequence:NP_444325.2Re-query CCDS DB by Nucleotide ID:NM_053095Re-query CCDS DB by Protein ID:NP_444325
Current member NCBI NM_053095.3 NP_444325.3 Pending alive Link to Nucleotide Sequence:NM_053095.3Link to Protein Sequence:NP_444325.3Re-query CCDS DB by Nucleotide ID:NM_053095Re-query CCDS DB by Protein ID:NP_444325Link to BLAST:NP_444325.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444325.3 181 Q925S4 181 99.4475% 0 1

Chromosomal Locations for CCDS 15262.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130882455 130882538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130883334 130883408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130883834 130883992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130884788 130884850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130885577 130885770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130887252 130887339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGCTGACTGAGCCTGCCCAACTTTTTGTGCACAAGAAGAACCAGCCACCTTCACACAGCAGCCTCCGGC
TTCACTTTAGGACCCTAGCAGGAGCACTGGCCCTTTCTTCAACACAGATGAGTTGGGGACTACAGATTCT
CCCCTGCCTGAGCCTAATCCTTCTTCTTTGGAACCAAGTGCCAGGGCTTGAGGGTCAAGAGTTCCGATTT
GGGTCTTGCCAAGTGACAGGGGTGGTTCTCCCAGAACTGTGGGAGGCCTTCTGGACTGTGAAGAACACTG
TGCAAACTCAGGATGACATCACAAGCATCCGGCTGTTGAAGCCGCAGGTTCTGCGGAATGTCTCGGGTGC
TGAGAGCTGTTACCTTGCCCACAGCCTGCTGAAGTTCTACTTGAACACTGTTTTCAAGAACTACCACAGC
AAAATAGCCAAATTCAAGGTCTTGAGGTCATTCTCCACTCTGGCCAACAACTTCATAGTCATCATGTCAC
AACTACAGCCCAGTAAGGACAATTCCATGCTTCCCATTAGTGAGAGTGCACACCAGCGGTTTTTGCTGTT
CCGCAGAGCATTCAAACAGTTGGATACAGAAGTCGCTTTGGTGAAAGCCTTTGGGGAAGTGGACATTCTC
CTGACCTGGATGCAGAAATTCTACCATCTCTGA

Translation (220 aa):
MLTEPAQLFVHKKNQPPSHSSLRLHFRTLAGALALSSTQMSWGLQILPCLSLILLLWNQVPGLEGQEFRF
GSCQVTGVVLPELWEAFWTVKNTVQTQDDITSIRLLKPQVLRNVSGAESCYLAHSLLKFYLNTVFKNYHS
KIAKFKVLRSFSTLANNFIVIMSQLQPSKDNSMLPISESAHQRFLLFRRAFKQLDTEVALVKAFGEVDIL
LTWMQKFYHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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