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Report for CCDS51530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51530.1 Reviewed, update pending Mus musculus 5 Igfbp7 23 108 98 CCDS HistoryNCBI Gene:29817Re-query CCDS DB by CCDS ID:51530.1Re-query CCDS DB by GeneID:29817See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163898.5 ENSMUSP00000128318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163898.5Link to Ensembl Protein Viewer:ENSMUSP00000128318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163898Re-query CCDS DB by Protein ID:ENSMUSP00000128318
Original member NCBI NM_001159518.1 NP_001152990.1 Updated not alive Link to Nucleotide Sequence:NM_001159518.1Link to Protein Sequence:NP_001152990.1Re-query CCDS DB by Nucleotide ID:NM_001159518Re-query CCDS DB by Protein ID:NP_001152990
Current member NCBI NM_001159518.2 NP_001152990.2 Pending alive Link to Nucleotide Sequence:NM_001159518.2Link to Protein Sequence:NP_001152990.2Re-query CCDS DB by Nucleotide ID:NM_001159518Re-query CCDS DB by Protein ID:NP_001152990Link to BLAST:NP_001152990.2

Chromosomal Locations for CCDS 51530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77349480 77349499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77351228 77351354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77351913 77352029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77355562 77355671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77401487 77401579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77407540 77408014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGATGGAGCGGCCGCCGCGCGCCCTGCTGCTGGGTGCAGCCGGACTGCTGCTCCTGCTCCTGCCCCTCT
CCTCTTCCTCCTCTTCGGATGCCTGCGGCCCGTGCGTGCCGGCCTCCTGCCCCGCGCTGCCCCGGCTCGG
CTGCCCGCTGGGTGAGACCCGCGACGCGTGCGGGTGCTGCCCGGTGTGTGCTCGCGGCGAGGGTGAGCCG
TGCGGGGGCGGCGCGGCCGGCAGGGGGCACTGCGCGCCGGGCATGGAGTGCGTGAAGAGCCGCAAGAGGC
GGAAGGGTAAAGCCGGGGCAGCAGCCGGCGGTCCCGCGACCCTCGCCGTGTGCGTGTGCAAGAGCCGCTA
CCCGGTGTGCGGCAGCAACGGCATCACCTACCCCAGCGGCTGCCAGCTGCGCGCTGCCAGCCTGCGCGCC
GAGAGCCGCGGGGAGAAGGCCATCACCCAGGTCAGCAAGGGCACCTGCGAGCAAGGGTCTCTGATATGGG
ACACCCAACCAGCCCAAAGGAGTCACAACCCACAGGTTGAGAACCGCTGTTTTAGAGACAAGCACTCCAG
AGAACAAGGTCCTTCCATAGTGACGCCCCCCAAGGACATCTGGAACGTCACTGGTGCCAAGGTGTTCTTG
AGCTGTGAGGTCATCGGGATCCCAACCCCTGTCCTCATCTGGAACAAGGTAAAAAGGGATCACTCTGGAG
TTCAGCGGACAGAACTCTTGCCTGGTGACCGGGAAAATCTGGCCATTCAGACCCGGGGTGGTCCAGAAAA
GCATGAAGTAACGGGCTGGGTGCTGGTATCTCCTCTAAGTAAGGAGGACGCTGGAGAGTATGAGTGCCAC
GCATCCAACTCCCAAGGGCAGGCTTCCGCGGCAGCCAAAATTACAGTGGTTGATGCCCTCCATGAAATAC
CACTGAAAAAAGGTGAAGGTGCTCAGTTATAA

Translation (313 aa):
MMERPPRALLLGAAGLLLLLLPLSSSSSSDACGPCVPASCPALPRLGCPLGETRDACGCCPVCARGEGEP
CGGGAAGRGHCAPGMECVKSRKRRKGKAGAAAGGPATLAVCVCKSRYPVCGSNGITYPSGCQLRAASLRA
ESRGEKAITQVSKGTCEQGSLIWDTQPAQRSHNPQVENRCFRDKHSREQGPSIVTPPKDIWNVTGAKVFL
SCEVIGIPTPVLIWNKVKRDHSGVQRTELLPGDRENLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECH
ASNSQGQASAAAKITVVDALHEIPLKKGEGAQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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