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Report for CCDS26139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26139.1 Public Mus musculus 12 Serpina1d 23 108 98 CCDS HistoryNCBI Gene:20703Re-query CCDS DB by CCDS ID:26139.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078869.5 ENSMUSP00000077909.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078869.5Link to Ensembl Protein Viewer:ENSMUSP00000077909.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078869Re-query CCDS DB by Protein ID:ENSMUSP00000077909
Original member Current member NCBI NM_009246.3 NP_033272.1 Accepted alive Link to Nucleotide Sequence:NM_009246.3Link to Protein Sequence:NP_033272.1Re-query CCDS DB by Nucleotide ID:NM_009246Re-query CCDS DB by Protein ID:NP_033272Link to BLAST:NP_033272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033272.1 413 Q00897 413 100% 0 0

Chromosomal Locations for CCDS 26139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103763680 103763871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103764668 103764818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103765700 103765970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103767416 103768043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGACTCCCTCCATCTCATGGAGTCTGCTGCTTCTGGCAGGCCTGTGTTGCCTGGTCCCCAGCTTTCTGG
CTGAGGATGTTCAGGAGACAGACACCTCCCAGAAGGATCAGTCCCCAGCCTCCCATGAGATCGCTACAAA
CCTGGGAGACTTTGCCCTCAGACTATACAGGGAGCTGGTCCATCAGTCCAACACTTCCAACATCTTCTTC
TCCCCAGTGAGCATTGCCACAGCCTTTGCTATGCTCTCCCTAGGGAGCAAGGGTGACACTCACACGCAGA
TCCTAGAGGGCCTGCAGTTCAACCTCACACAAACATCGGAGGCTGACATCCACAAGTCCTTCCAACACCT
CCTCCAAACCCTCAACAGACCAGACAGTGAGCTGCAGCTGAGCACAGGCAATGGCCTCTTTGTCAACAAT
GACCTGAAGCTGGTGGAGAAGTTTCTGGAAGAGGCCAAGAACCATTATCAGGCAGAAGTCTTCTCTGTCA
ACTTTGCAGAGTCAGAGGAGGCCAAGAAAGTGATTAATGATTTTGTGGAGAAGGGAACCCAAGGAAAGAT
AGTTGAGGCGGTGAAAAAACTGGACCAAGACACAGTTTTCGCCCTGGCGAATTACATTCTCTTTAAAGGC
AAATGGAAACAGCCATTCGATCCTGAGAACACTGAGGAAGCTGAGTTCCATGTGGACGAGTCCACCACAG
TGAAGGTGCCCATGATGACCCTCTCGGGCATGCTTGATGTGCATCATTGCAGCATGCTGTCCAGCTGGGT
GCTGCTGATGGATTACGCAGGCAACACCACTGCTGTCTTCCTCCTGCCCGATGATGGGAAGATGCAGCAT
CTGGAGCAAACTCTCAACAAGGAGCTCATCTCTCAGTTCCTGCTAAACAGGCGCAGAAGCGATGCTCAGA
TCCATATCCCCAGACTGTCCATCTCTGGAAACTATAACTTGAAGACACTCATGAGTCCACTGGGCATCAC
CCGGATCTTCAACAATGGGGCTGACCTCTCCGGAATCACAGAGGAGAATGCTCCCCTGAAGCTCAGCAAG
GCTGTGCATAAGGCTGTGCTGACCATCGATGAGACAGGAACAGAAGCTGCAGCAGCTACAGTCTTACAAG
TCGCTACTTATTCTATGCCCCCTATCGTGCGCTTCGACCACCCTTTCCTTTTCATAATATTTGAAGAACA
CACTCAGAGCCCCATCTTTGTGGGAAAAGTGGTAGATCCCACACATAAATGA

Translation (413 aa):
MTPSISWSLLLLAGLCCLVPSFLAEDVQETDTSQKDQSPASHEIATNLGDFALRLYRELVHQSNTSNIFF
SPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHKSFQHLLQTLNRPDSELQLSTGNGLFVNN
DLKLVEKFLEEAKNHYQAEVFSVNFAESEEAKKVINDFVEKGTQGKIVEAVKKLDQDTVFALANYILFKG
KWKQPFDPENTEEAEFHVDESTTVKVPMMTLSGMLDVHHCSMLSSWVLLMDYAGNTTAVFLLPDDGKMQH
LEQTLNKELISQFLLNRRRSDAQIHIPRLSISGNYNLKTLMSPLGITRIFNNGADLSGITEENAPLKLSK
AVHKAVLTIDETGTEAAAATVLQVATYSMPPIVRFDHPFLFIIFEEHTQSPIFVGKVVDPTHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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