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Report for CCDS2424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2424.1 Public Homo sapiens 2 PRKAG3 24 110 108 CCDS HistoryNCBI Gene:53632Re-query CCDS DB by CCDS ID:2424.1Re-query CCDS DB by GeneID:53632See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 2424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233944.7 ENSP00000233944.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000233944.7Link to Ensembl Protein Viewer:ENSP00000233944.3Re-query CCDS DB by Nucleotide ID:ENST00000233944Re-query CCDS DB by Protein ID:ENSP00000233944
Original member Current member EBI ENST00000439262.7 ENSP00000397133.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439262.7Link to Ensembl Protein Viewer:ENSP00000397133.3Re-query CCDS DB by Nucleotide ID:ENST00000439262Re-query CCDS DB by Protein ID:ENSP00000397133
Original member Current member EBI ENST00000529249.5 ENSP00000436068.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529249.5Link to Ensembl Protein Viewer:ENSP00000436068.1Re-query CCDS DB by Nucleotide ID:ENST00000529249Re-query CCDS DB by Protein ID:ENSP00000436068
Original member Current member NCBI NM_017431.4 NP_059127.2 Accepted alive Link to Nucleotide Sequence:NM_017431.4Link to Protein Sequence:NP_059127.2Re-query CCDS DB by Nucleotide ID:NM_017431Re-query CCDS DB by Protein ID:NP_059127Link to BLAST:NP_059127.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059127.2 489 Q9UGI9-1 489 100% 0 0

Chromosomal Locations for CCDS 2424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218823762 218823878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218824222 218824368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218824539 218824576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218826928 218827093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218827247 218827373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218827575 218827629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218827833 218827878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218828004 218828062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218828519 218828600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218829978 218830381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218830746 218830901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218831336 218831375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218831738 218831770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGAGCCCGGGCTGGAGCACGCACTGCGCAGGACCCCTTCCTGGAGCAGCCTTGGGGGTTCTGAGCATC
AAGAGATGAGCTTCCTAGAGCAAGAAAACAGCAGCTCATGGCCATCACCAGCTGTGACCAGCAGCTCAGA
AAGAATCCGTGGGAAACGGAGGGCCAAAGCCTTGAGATGGACAAGGCAGAAGTCGGTGGAGGAAGGGGAG
CCACCAGGTCAGGGGGAAGGTCCCCGGTCCAGGCCAGCTGCTGAGTCCACCGGGCTGGAGGCCACATTCC
CCAAGACCACACCCTTGGCTCAAGCTGATCCTGCCGGGGTGGGCACTCCACCAACAGGGTGGGACTGCCT
CCCCTCTGACTGTACAGCCTCAGCTGCAGGCTCCAGCACAGATGATGTGGAGCTGGCCACGGAGTTCCCA
GCCACAGAGGCCTGGGAGTGTGAGCTAGAAGGCCTGCTGGAAGAGAGGCCTGCCCTGTGCCTGTCCCCGC
AGGCCCCATTTCCCAAGCTGGGCTGGGATGACGAACTGCGGAAACCCGGCGCCCAGATCTACATGCGCTT
CATGCAGGAGCACACCTGCTACGATGCCATGGCAACTAGCTCCAAGCTAGTCATCTTCGACACCATGCTG
GAGATCAAGAAGGCCTTCTTTGCTCTGGTGGCCAACGGTGTGCGGGCAGCCCCTCTATGGGACAGCAAGA
AGCAGAGCTTTGTGGGGATGCTGACCATCACTGACTTCATCCTGGTGCTGCATCGCTACTACAGGTCCCC
CCTGGTCCAGATCTATGAGATTGAACAACATAAGATTGAGACCTGGAGGGAGATCTACCTGCAAGGCTGC
TTCAAGCCTCTGGTCTCCATCTCTCCTAATGATAGCCTGTTTGAAGCTGTCTACACCCTCATCAAGAACC
GGATCCATCGCCTGCCTGTTCTTGACCCGGTGTCAGGCAACGTACTCCACATCCTCACACACAAACGCCT
GCTCAAGTTCCTGCACATCTTTGGTTCCCTGCTGCCCCGGCCCTCCTTCCTCTACCGCACTATCCAAGAT
TTGGGCATCGGCACATTCCGAGACTTGGCTGTGGTGCTGGAGACAGCACCCATCCTGACTGCACTGGACA
TCTTTGTGGACCGGCGTGTGTCTGCACTGCCTGTGGTCAACGAATGTGGTCAGGTCGTGGGCCTCTATTC
CCGCTTTGATGTGATTCACCTGGCTGCCCAGCAAACCTACAACCACCTGGACATGAGTGTGGGAGAAGCC
CTGAGGCAGAGGACACTATGTCTGGAGGGAGTCCTTTCCTGCCAGCCCCACGAGAGCTTGGGGGAAGTGA
TCGACAGGATTGCTCGGGAGCAGGTACACAGGCTGGTGCTAGTGGACGAGACCCAGCATCTCTTGGGCGT
GGTCTCCCTCTCCGACATCCTTCAGGCACTGGTGCTCAGCCCTGCTGGCATCGATGCCCTCGGGGCCTGA

Translation (489 aa):
MEPGLEHALRRTPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEEGE
PPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVGTPPTGWDCLPSDCTASAAGSSTDDVELATEFP
ATEAWECELEGLLEERPALCLSPQAPFPKLGWDDELRKPGAQIYMRFMQEHTCYDAMATSSKLVIFDTML
EIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGC
FKPLVSISPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTIQD
LGIGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQTYNHLDMSVGEA
LRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLSPAGIDALGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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