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Report for CCDS17218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17218.1 Public Mus musculus 2 Sox18 23 108 98 CCDS HistoryNCBI Gene:20672Re-query CCDS DB by CCDS ID:17218.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054491.5 ENSMUSP00000062759.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054491.5Link to Ensembl Protein Viewer:ENSMUSP00000062759.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054491Re-query CCDS DB by Protein ID:ENSMUSP00000062759
Original member Current member NCBI NM_009236.2 NP_033262.2 Accepted alive Link to Nucleotide Sequence:NM_009236.2Link to Protein Sequence:NP_033262.2Re-query CCDS DB by Nucleotide ID:NM_009236Re-query CCDS DB by Protein ID:NP_033262Link to BLAST:NP_033262.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033262.2 377 P43680 377 100% 0 0

Chromosomal Locations for CCDS 17218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181670203 181670996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181671182 181671521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGCAGAGATCGCCGCCCGGCTACGGCGCACAGGACGACCCGCCCTCCCGCCGCGACTGTGCATGGGCCC
CTGGAATCGGGGCCGCTGCTGAGGCGCGCGGCCTCCCTGTCACCAACGTCTCGCCCACCTCGCCCGCCTC
CCCGTCCAGCCTTCCGCGGAGCCCACCGCGCAGCCCCGAATCAGGGCGCTATGGCTTTGGCCGCGGAGAG
CGCCAAACTGCCGACGAGTTGCGCATTCGGCGGCCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAGC
GCAAGCGACTGGCGCAACAAAATCCGGATCTGCACAACGCAGTACTGAGCAAGATGCTGGGCAAAGCGTG
GAAGGAGCTGAACACGGCGGAGAAGCGGCCCTTCGTGGAAGAGGCCGAACGGCTGCGTGTGCAGCACTTG
CGCGACCATCCCAACTACAAGTACCGGCCTCGCCGCAAAAAACAGGCGCGCAAGGTCCGGAGGCTGGAGC
CGGGCCTCTTGCTCCCGGGCCTCGTGCAGCCGTCTGCGCCGCCCGAGGCCTTCGCTGCAGCGTCAGGGTC
AGCTCGCTCCTTCCGCGAGCTACCCACTCTGGGTGCGGAGTTCGATGGCTTGGGGCTACCCACGCCCGAG
CGCTCGCCTCTGGACGGCCTGGAGCCTGGCGAGGCCTCCTTCTTCCCACCGCCTTTGGCGCCCGAGGACT
GCGCTCTGCGGGCTTTCCGGGCACCCTATGCCCCTGAGCTGGCACGGGACCCGAGCTTCTGCTACGGGGC
GCCCCTGGCTGAAGCGCTCAGGACAGCGCCGCCTGCCGCGCCACTCGCAGGTCTCTACTATGGCACCCTG
GGCACTCCGGGCCCGTTTCCCAATCCTCTGTCACCACCACCTGAGTCCCCGTCTCTTGAGGGCACAGAGC
AACTGGAGCCTACCGCCGACCTTTGGGCCGATGTGGACCTCACCGAATTTGACCAGTATCTCAATTGCAG
CCGGACTCGACCGGATGCCACTACACTCCCCTACCACGTGGCACTGGCCAAACTAGGTCCGCGCGCCATG
TCCTGTCCAGAAGAGAGCAGCCTCATTTCTGCGCTGTCTGATGCTAGCAGCGCGGTCTATTACAGTGCTT
GCATCTCAGGCTAG

Translation (377 aa):
MQRSPPGYGAQDDPPSRRDCAWAPGIGAAAEARGLPVTNVSPTSPASPSSLPRSPPRSPESGRYGFGRGE
RQTADELRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHL
RDHPNYKYRPRRKKQARKVRRLEPGLLLPGLVQPSAPPEAFAAASGSARSFRELPTLGAEFDGLGLPTPE
RSPLDGLEPGEASFFPPPLAPEDCALRAFRAPYAPELARDPSFCYGAPLAEALRTAPPAAPLAGLYYGTL
GTPGPFPNPLSPPPESPSLEGTEQLEPTADLWADVDLTEFDQYLNCSRTRPDATTLPYHVALAKLGPRAM
SCPEESSLISALSDASSAVYYSACISG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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