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Report for CCDS16735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16735.1 Public Mus musculus 2 Snrpb 23 108 98 CCDS HistoryNCBI Gene:20638Re-query CCDS DB by CCDS ID:16735.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103199.8 ENSMUSP00000099488.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103199.8Link to Ensembl Protein Viewer:ENSMUSP00000099488.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103199Re-query CCDS DB by Protein ID:ENSMUSP00000099488
Original member NCBI NM_009225.2 NP_033251.1 Updated not alive Link to Nucleotide Sequence:NM_009225.2Link to Protein Sequence:NP_033251.1Re-query CCDS DB by Nucleotide ID:NM_009225Re-query CCDS DB by Protein ID:NP_033251
Current member NCBI NM_009225.3 NP_033251.1 Accepted alive Link to Nucleotide Sequence:NM_009225.3Link to Protein Sequence:NP_033251.1Re-query CCDS DB by Nucleotide ID:NM_009225Re-query CCDS DB by Protein ID:NP_033251Link to BLAST:NP_033251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033251.1 231 P27048 231 100% 0 0

Chromosomal Locations for CCDS 16735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130171933 130171943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130172603 130172728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130173036 130173174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130173607 130173759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130175330 130175441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130177015 130177166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130179234 130179236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGACGGTGGGCAAGAGCAGCAAGATGCTGCAGCACATTGACTACAGGATGAGGTGCATCCTGCAGGACG
GCCGCATCTTCATCGGGACCTTCAAAGCCTTTGACAAGCACATGAACTTGATCCTGTGTGACTGTGATGA
GTTCAGGAAGATCAAGCCAAAGAACTCCAAACAAGCAGAAAGGGAAGAGAAGCGAGTCCTTGGTCTGGTG
TTGCTTCGAGGGGAGAACCTGGTCTCCATGACAGTAGAAGGACCTCCTCCCAAAGATACTGGCATTGCCC
GAGTGCCACTTGCTGGAGCTGCTGGGGGGCCAGGCATCGGCAGGGCTGCTGGCAGAGGAATCCCGGCTGG
TGTTCCTATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCAGTCCGAGGTGTTGGAGGGCCATCCCAACAG
GTGATGACCCCACAAGGAAGAGGCACTGTTGCAGCTGCTGCCGCTGCAGCCACAGCCAGTATTGCAGGAG
CCCCAACTCAGTACCCACCTGGTCGTGGGGGTCCTCCTCCACCTATGGGCCGAGGAGCCCCTCCTCCAGG
TATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCTGGCCGAGGA
ACTCCAATGGGCATGCCCCCTCCTGGCATGCGGCCTCCTCCTCCAGGCATGCGAGGTCTGCTTTGA

Translation (231 aa):
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV
LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ
VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGLPPGRG
TPMGMPPPGMRPPPPGMRGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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