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Report for CCDS17531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17531.1 Public Mus musculus 3 Snapin 23 108 98 CCDS HistoryNCBI Gene:20615Re-query CCDS DB by CCDS ID:17531.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149884.1 ENSMUSP00000122090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149884.1Link to Ensembl Protein Viewer:ENSMUSP00000122090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149884Re-query CCDS DB by Protein ID:ENSMUSP00000122090
Original member Current member NCBI NM_133854.3 NP_598615.1 Accepted alive Link to Nucleotide Sequence:NM_133854.3Link to Protein Sequence:NP_598615.1Re-query CCDS DB by Nucleotide ID:NM_133854Re-query CCDS DB by Protein ID:NP_598615Link to BLAST:NP_598615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598615.1 136 Q9Z266-1 136 100% 0 0

Chromosomal Locations for CCDS 17531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90489492 90489593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90490154 90490272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90490548 90490594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90490832 90490974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCCGCGGCTGGTTCCGCTGCTGTGTCAGGGGCCGGGACCCCAGTGGCGGGGCCCACAGGCCGCGACC
TCTTTGCCGAGGGGCTCCTGGAGTTCCTGCGACCCGCGGTGCAGCAGCTCGACTCTCACGTGCACGCGGT
CAGAGAAAGCCAAGTAGAGCTCCGGGAACAAATTGACAACCTAGCTACAGAACTGTGCCGGATCAATGAG
GATCAGAAAGTGGCCCTGGATCTGGACCCCTATGTTAAGAAGCTGCTTAATGCCAGGCGACGAGTTGTCT
TGGTCAACAATATTTTACAGAATGCACAGGAACGACTAAGGCGGTTAAACCACAGCGTGGCCAAGGAAAC
AGCTCGCAGGAGAGCTATGCTGGATTCAGGAGTTTACCCTCCTGGTTCTCCAAGCAAATAA

Translation (136 aa):
MAAAGSAAVSGAGTPVAGPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINE
DQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARRRAMLDSGVYPPGSPSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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