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Report for CCDS29812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29812.1 Public Mus musculus 19 Slit1 23 108 98 CCDS HistoryNCBI Gene:20562Re-query CCDS DB by CCDS ID:29812.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025993.9 ENSMUSP00000025993.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025993.9Link to Ensembl Protein Viewer:ENSMUSP00000025993.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025993Re-query CCDS DB by Protein ID:ENSMUSP00000025993
Original member Current member NCBI NM_015748.3 NP_056563.2 Accepted alive Link to Nucleotide Sequence:NM_015748.3Link to Protein Sequence:NP_056563.2Re-query CCDS DB by Nucleotide ID:NM_015748Re-query CCDS DB by Protein ID:NP_056563Link to BLAST:NP_056563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056563.2 1531 Q80TR4 1531 100% 0 0

Chromosomal Locations for CCDS 29812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41600451 41600689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41601489 41601700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41602087 41602375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41603326 41603480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41604312 41604442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41606360 41606588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41608318 41608455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41610801 41610894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41611002 41611141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41614402 41614499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41614790 41614914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41616665 41616828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41624498 41624569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41625522 41625593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41627241 41627312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41629870 41629938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41630764 41630896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41634155 41634321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41634600 41634743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41637469 41637612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41637777 41637851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41638569 41638713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41638883 41638906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41639703 41639866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41646016 41646159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41646968 41647039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41648516 41648587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41648985 41649056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41649412 41649559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41650677 41650840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41651155 41651226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41651631 41651702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41652695 41652766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41721040 41721111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41727070 41727141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41729055 41729126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41743212 41743408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4596 nt):
ATGGCGCTAACGCCCCAGCGCGGGTCCTCTTCGGGGTTGAGCCGACCGGAGCTGTGGCTGCTGCTGTGGG
CAGCCGCGTGGCGCCTGGGGGCCACGGCGTGCCCCGCCCTCTGCACCTGCACCGGCACTACGGTGGACTG
CCACGGCACGGGTTTGCAGGCCATCCCCAAGAACATCCCACGGAACACCGAGCGCCTGGAACTCAACGGC
AACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTGCAGCTGATGG
AGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCTACGGCTGAA
CCGCAACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACTGGACCTG
AGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTACAGC
TGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCTGAC
CCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTTC
CGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGC
CCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCA
AAAGGGCGAGTTCAGCTGCTCAGGCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGT
TCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCC
CTGCTAACCTTCCAGAGACCATGACAGAGATCCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGG
AGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATAGACCTGAGCAACAACCAGATTGCAGAGATTGCACCC
GACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCTGGTCCTCTATGGCAACAAGATTACAGACCTGCCCC
GAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCTGCTTCTAAATGCCAACAAGATCAACTGCATCCG
GCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTC
GCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACTGCATCTGGCCCAGAATCCTTTCATCTGTG
ACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGC
CAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCCAAA
GAGCAGTACTTCATTCCAGGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCC
CACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCG
AATCCCCCAGTCCACGACTGAGCTACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTG
TTTAAGAAGCTCTCACATCTGAAGAAAATAAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGA
CGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGG
CATGTTCCGGGGTCTAGATGGCTTGCGGACCCTGATGCTGAGGAACAACCGTATCAGCTGTATCCACAAC
GACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCC
CTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTAAACCTCCTGGCCAACCCGTTCAACTGCAACTG
CCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAAC
CCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAGGCCAGG
AGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTG
CAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTCTATTTGGATGGG
AACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGTGGACTTGAGCAACA
ACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCTGATCCTCAGCTA
CAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCTGTCTTTGCAT
GGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCTGGCCATTG
GTGCCAACCCCCTGTACTGCGACTGCCGCCTCCGGTGGCTCTCCAGTTGGGTGAAGACTGGCTACAAGGA
ACCTGGCATTGCCCGCTGTGCTGGACCCCCAGAGATGGAGGGCAAACTGTTACTCACCACACCTGCCAAG
AAGTTTGAATGCCAAGGTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCAT
GCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAA
GGGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCAT
GCCCAGGAGGGCGAGGATGCTGGCTTCACGTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAG
TGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTA
CACATGTCAGTGCCCCCTGCAGTACACAGGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGAT
ATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAGGTGTGAGTGCATGCTAG
GTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCA
GTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGTGGACAGCTCTGTGAGATC
CCACCTGCCCCCAGGAGCTCCTGTGAGGGGACGGAGTGCCAGAATGGAGCCAACTGCGTAGACCAGGGAA
GCCGGCCCGTATGCCAGTGCCTACCAGGCTTTGGTGGCCCTGAATGTGAGAAATTGCTCAGTGTCAACTT
TGTGGACCGGGACACTTATCTGCAGTTCACTGACCTGCAGAACTGGCCTCGGGCCAACATCACTCTTCAG
GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGT
ACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAGCGCTGAGAC
GATCAACGATGGGCAGTTCCACACCGTTGAGCTGGTCACCTTCGACCAGATGGTGAACCTCTCCATCGAT
GGCGGCAGCCCCATGACCATGGACAACTTTGGCAAGCACTACACCCTCAACAGCGAGGCCCCCCTCTATG
TGGGAGGGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTT
CCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCA
GGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCA
CCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCC
CTGCCATGGCCACAAGTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGC
CAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGT
GCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGG
CGAGCTGTGTGAGCAAGAGTCCGAGTGCCGGGGGGACCCTGTCCGGGACTTTCACCGGGTCCAGAGGGGC
TATGCCATCTGCCAGACCACACGCCCGCTGTCGTGGGTGGAATGCCGGGGCGCGTGCCCGGGCCAGGGCT
GCTGCCAGGGCCTGCGGCTGAAGCGGAGGAAGCTCACCTTCGAGTGCAGCGATGGGACTTCGTTTGCTGA
GGAGGTGGAGAAGCCCACCAAGTGTGGCTGTGCCCAGTGCGCATAA

Translation (1531 aa):
MALTPQRGSSSGLSRPELWLLLWAAAWRLGATACPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNG
NNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDL
SENFLQAVPRKAFRGATDLKNLQLDKNRISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTF
RLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKGEFSCSGQGEAAGAPACTLSSG
SCPAMCSCSSGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAP
DAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSL
AKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETTGARCASPRRLANKRIGQIKSKKFRCSAK
EQYFIPGTEDYHLNSECTSDVACPHKCRCEASVVECSSLKLSKIPERIPQSTTELRLNNNEISILEATGL
FKKLSHLKKINLSNNKVSEIEDGTFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHN
DSFTGLRNVRLLSLYDNHITTISPGAFDTLQALSTLNLLANPFNCNCHLSWLGDWLRKRKIVTGNPRCQN
PDFLRQIPLQDVAFPDFRCEEGQEEVGCLPRPQCPQECACLDTVVRCSNKHLQALPKGIPKNVTELYLDG
NQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLH
GNDVSTLQEGIFADVTSLSHLAIGANPLYCDCRLRWLSSWVKTGYKEPGIARCAGPPEMEGKLLLTTPAK
KFECQGPPSLAVQAKCDPCLSSPCQNQGTCHNDPLEVYRCTCPSGYKGRHCEVSLDGCSSNPCGNGGTCH
AQEGEDAGFTCSCPSGFEGPTCGVDTDDCVKHACVNGGVCVDGVGNYTCQCPLQYTGRACEQLVDFCSPD
MNPCQHEAQCVGTPDGPRCECMLGYTGDNCSENQDDCKDHKCQNGAQCVDEVNSYACLCVEGYSGQLCEI
PPAPRSSCEGTECQNGANCVDQGSRPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQ
VSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVTFDQMVNLSID
GGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNELQDFTKTQMKP
GVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWGGLHCDQPVDGPCHGHKCVHGKCVPLDALAYSCQC
QDGYSGALCNQVGAVAEPCGGLQCLHGHCQASATKGAHCVCSPGFSGELCEQESECRGDPVRDFHRVQRG
YAICQTTRPLSWVECRGACPGQGCCQGLRLKRRKLTFECSDGTSFAEEVEKPTKCGCAQCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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