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Report for CCDS18485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18485.1 Public Mus musculus 4 Stil 23 108 98 CCDS HistoryNCBI Gene:20460Re-query CCDS DB by CCDS ID:18485.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030490.12 ENSMUSP00000030490.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030490.12Link to Ensembl Protein Viewer:ENSMUSP00000030490.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030490Re-query CCDS DB by Protein ID:ENSMUSP00000030490
Original member Current member NCBI NM_009185.3 NP_033211.2 Accepted alive Link to Nucleotide Sequence:NM_009185.3Link to Protein Sequence:NP_033211.2Re-query CCDS DB by Nucleotide ID:NM_009185Re-query CCDS DB by Protein ID:NP_033211Link to BLAST:NP_033211.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033211.2 1262 Q60988 1262 99.9208% 0 1

Chromosomal Locations for CCDS 18485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115002922 115002932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115004873 115004980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115006682 115006794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115007136 115007323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115009271 115009518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115010064 115010147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115011794 115011880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115014074 115014224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115016172 115016287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115021475 115021589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115023482 115024417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115029869 115030037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115032643 115032871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115038338 115038530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115039068 115039318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115041174 115041963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3789 nt):
ATGAATACCAGGTTTCCTTCAAGCAAGATGGTACCTTTCCATTTTCCCCCATCAAAATTGGCACTTTGGA
ACCCAATGCCAATTGGAGAGTGCATCTACTTGCATCTCAGTTACTACAGAAAGCCAAAGCTTATGGTAAC
TGAAAAGGCCATCCGACTTGCTTATCGTCATGCTAAGCAGAATAAAAAAAATGTGCCATGCTTCTTACTT
GGTTCTCTCACAGTGGATGAAGATGAAGAAGGTGTGACATTGACCATAGATCGCTTTGATCCTGGTCGAG
AAATACCTGAATGCTTAGAAAGAACTCCTACTGCTTCTCTTCCTGGAGATTTTTTGATTCCCTGCAGAGT
TCATATTCAAGGACTTGGTTCAAGGGATGTGATAGTTCATAATGCAGATGACTTCAGTTCAGCTTTAAAG
GCTTTACAATACCATGTGTGTAGCAAAGATTTCTTGGACTGTGGAAAGTTGCTTTGCCTACGAGCCCAAA
TCACCCCCAGGGAGAGTTTAGATGGTGTGGATTTTAACTTGCAATGGACAGCAGTAACTCTAGCAAATTC
CTTCAAGTGTGTGCCTGTGAAGCCTATCCCCATTATCCCTACAGCACTTGCAAGAAACCTAAGTAGTAAT
TTGAATATTTCTCAAGTTCAGGGAACCTATAAACATGGATATATTACTATGGATGAAACTCGCAAACTGT
TACTTTTGCTGCAATCAGATCCCAAGGTCTCTTCTCTCCCGTTAGTGGGAATCTGGCTGGCTGGAATTAT
ACATGTCTATAGCCCTCAGGTATGGGCTTGCTGCTTGAGATACATGTTCAGTTCTTCCATTCAGGAAAGG
GTTTTTTCAGAATCTGGAAATTTCATCATAGTTCTTTATTCATTGACACATAAGGAGCCTGAGTTTTATG
AGTGCCTTCCTTGTGAGAGTAGGACGCCCGACCTTCAGTTTCAGTTACTAACCAACAAGGAGACTTTGCA
TCTTTTCAATAACGTTGAACCTTCTGGCAAAAACCCAATCCATTTTGAACTCAGTGCCGAGAGTCAAGAT
GCCGAAGCCGAGGCAGAGGTTCTTAGCAAGATTTCCAAGACTCTTCCAGTGAAGAGATCCTCCCAAAAAT
TATCTCCTGGGAAAATACCAATAAATAAGCATGACACTGACCTTGAAGATGAAGACTTTTCTCCAAGACC
GATTCCTAGTCCTCACCCAGTGAGTCAGAAGATTTCTAAGGTCCAGCCATCTGTTCCTGAACTTTCGCTC
GTGTTAGACAACAACTTCACAGAGTCAAGTAACCAGTCTAACCCTTTGGAAATGATGACTGTGGAGAATC
CTTTATTGATTAAGCCATCCCAGCCTGAGCTTTGTGATGCCAAACACAGCTCAGAAGCTACCACTGGGGA
GCCTTTCCGGAGGGGCCCAACAAATCAGTTAAGTCAGGACACTGCTTTAAGACAGAGCAGAGGGAAGCAG
TCATCTACCTGTAAGAAAGAGAGTCTCCAGTTCAGGAACACTAATGCTAAACCATCTCTCAGTGTGCCAT
CTCCTGATGTAGCTGAGAAACTTCAAGCAGTTTCTGCTGGGAGCATGCAAAAGGAAGACTACCCTGTGAG
ACCTTCCACACTGGACTCGAGGCAGCCCTCTCTTGCTCCACAAGCCCAGCCACACAATCTTGTTTTTTCA
ACTCATAATTCAACAAGACCAATGGAGCTTCAAGTGCCCACTCCTTCATTACCATCCTACTATCCCACAA
ACGTCTGCAGCTGTTGTCAGCATCATGGCCATATTCAGTATAGTACAATAAATTCTTGGCAGGGAAATAC
AGTAGGGTCTATTCAAGACCTGCGATCTGAGTCCCTTCCAAAACATGCCTTCTTTCACTCAAGTGGATGC
CCATCTCTGTGTCCTAATGCCATCTACTCGTCAAGTAGCCCTGTTAGCATGAAGCAAGGAGGCATGGGTG
CCTATTCTCCCCATAGCAATGGAGAACCGTCTCCTGTGGCAGGACCTTCACATGTGGACTCGTGTGTGCC
ACATCCCTGTGCCATGTGCATGCACATGCCCAATACAGCACCAGACAATGGCATGATGGGACTGTCTCCT
GATGCATACCGTTTTGTCACAGAGCAAGACAGGCAGCTGAGACTACTTCAGGCACAGATCCAGCGCTTAT
TAGAAGCACAATCTCTAGATCCTGGCTCCCATAAGACAGTAGCCACCGTGGAAGACACCGTGAAAGCAGC
AAAACAAATGGAGCTGGTTTCCATGGAAGCACAGTCTTCGCCTGGCTTGCACATGAGAAAAAGTGTAAGC
ATTGCTGTGAGCACAGGTGCTAGCTTGTTTTGGAATGCAGCAGGTGATGATCAAGAGCCCGACTCACAGC
CGAAGCAAGATGATACCAAGATTTCCAGTGAAGACATGAATTTTTCTGTAGATATTAATAATGAAGCGAC
AAGTCTTCCTGGTAGTGCATCTTCCTTAAAAGCAGTTGACATTCCTAGTTTTGAAGAAAGCAACCTTGCT
GTGGAGGAAGTTAATCAGCCACTTCCTGAATCCAACAGCTCTTCAGAGCAGAGCAAAGAACCTGGTGTTC
CTGTGTTCTTCCCAAATGCATTGCTGGCTGAAAGTGTGAGCATGTGCTTACAGACTGCGCCAACAGAGGG
AGCCAGTAACAGCACTGAATTACCACAGGGAACAAAAGATGAGCCTTACCGGCCATCAGATAACCAGAAA
ATTTACCAGGACTTGTTGGGCCAAGTGAACCACCTACTAAGTAACGCCTCCCAAGAAACCGAAGAACCAC
CTACCAAAGCGGTAGTTACCAACCGTGAATGCGCCAAGACCCAAAATACTCACCATGCAAGGAAAAAAAG
ACACAATTCAGGACTGGTAGACAAAGATTGTGTACTCAGTGCAACTATTAAACAGCTAAGGAGCCTAGGA
GTGAAAATCGACTCTCCCACTAAAGTGAAGAAAAATGAACAGAAAGTGGATCATGCCAGTGTTTTGGCCT
GCATCAGCCCGGAAGCAGTGATCTCTGGATTAAACTACATGTCGTTTGGTAATGTTGGCATGAGCAGCCT
AAGTCCCACTGGTGTGGATCTGAGCATGGAGGCCAATGCCATTGCTCTGAAGTACTTAAGTGAAAACCAG
CTGTCACAACTGTCTCTTGCTCGGTCAAAGCAGAATAACGGTGACTCCTCTGTCGGCCTTCTACATATTA
ATTCAGACAGGAGTACAGTGGGGCTTAGCTTAGTTTCACCAAGCAACATGTCATTTGCAACCAAAAAATA
CATGAAGAGGTATGGACTCTTACAAAGCAGTGACAATAGTGAGGATGAAGAGGAGCCTCCCAGCCACGCA
GATAGTGAGAGCGACCATGTGTTGAACAGAAACCCAGCATGCAGACCTGTGCAATGTGGTCATGAGAAAG
AGCCTTCTTGGAATGCCTGTGAAATAGCTCAGTGCTCTGACTGTGGCTCTGCGGACACACGCACAGATGT
GCCAGTACTGAGAAATATCACAAATCAAGCTGTGCAGCCTAGAGCAACAGAGCACTTGAATGAAGACTCT
GCTATTTCATTAAGGAATCTTAAGCCAAACCCGGCAATGAACCTCCGAACTGGAAAGGCAGAGTTTACTC
ATCATCCCGAGAAGGAAAATGAAAGAGACATTGCAGTTTTTCCCGGAACCTTGCCATCTCCTGAGACTTT
AAAACAAATGAATAGCATGGATTCTGTGGGCACCTTCTTAGACGTAAAGCGTCTCAGACAGTTACCTAAG
TTATTTTAA

Translation (1262 aa):
MNTRFPSSKMVPFHFPPSKLALWNPMPIGECIYLHLSYYRKPKLMVTEKAIRLAYRHAKQNKKNVPCFLL
GSLTVDEDEEGVTLTIDRFDPGREIPECLERTPTASLPGDFLIPCRVHIQGLGSRDVIVHNADDFSSALK
ALQYHVCSKDFLDCGKLLCLRAQITPRESLDGVDFNLQWTAVTLANSFKCVPVKPIPIIPTALARNLSSN
LNISQVQGTYKHGYITMDETRKLLLLLQSDPKVSSLPLVGIWLAGIIHVYSPQVWACCLRYMFSSSIQER
VFSESGNFIIVLYSLTHKEPEFYECLPCESRTPDLQFQLLTNKETLHLFNNVEPSGKNPIHFELSAESQD
AEAEAEVLSKISKTLPVKRSSQKLSPGKIPINKHDTDLEDEDFSPRPIPSPHPVSQKISKVQPSVPELSL
VLDNNFTESSNQSNPLEMMTVENPLLIKPSQPELCDAKHSSEATTGEPFRRGPTNQLSQDTALRQSRGKQ
SSTCKKESLQFRNTNAKPSLSVPSPDVAEKLQAVSAGSMQKEDYPVRPSTLDSRQPSLAPQAQPHNLVFS
THNSTRPMELQVPTPSLPSYYPTNVCSCCQHHGHIQYSTINSWQGNTVGSIQDLRSESLPKHAFFHSSGC
PSLCPNAIYSSSSPVSMKQGGMGAYSPHSNGEPSPVAGPSHVDSCVPHPCAMCMHMPNTAPDNGMMGLSP
DAYRFVTEQDRQLRLLQAQIQRLLEAQSLDPGSHKTVATVEDTVKAAKQMELVSMEAQSSPGLHMRKSVS
IAVSTGASLFWNAAGDDQEPDSQPKQDDTKISSEDMNFSVDINNEATSLPGSASSLKAVDIPSFEESNLA
VEEVNQPLPESNSSSEQSKEPGVPVFFPNALLAESVSMCLQTAPTEGASNSTELPQGTKDEPYRPSDNQK
IYQDLLGQVNHLLSNASQETEEPPTKAVVTNRECAKTQNTHHARKKRHNSGLVDKDCVLSATIKQLRSLG
VKIDSPTKVKKNEQKVDHASVLACISPEAVISGLNYMSFGNVGMSSLSPTGVDLSMEANAIALKYLSENQ
LSQLSLARSKQNNGDSSVGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLQSSDNSEDEEEPPSHA
DSESDHVLNRNPACRPVQCGHEKEPSWNACEIAQCSDCGSADTRTDVPVLRNITNQAVQPRATEHLNEDS
AISLRNLKPNPAMNLRTGKAEFTHHPEKENERDIAVFPGTLPSPETLKQMNSMDSVGTFLDVKRLRQLPK
LF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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