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Report for CCDS49265.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49265.2 Public Mus musculus 13 Shc3 23 108 98 CCDS HistoryNCBI Gene:20418Re-query CCDS DB by CCDS ID:49265.2See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 49265.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239056.1 ENSMUSP00000158865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239056.1Link to Ensembl Protein Viewer:ENSMUSP00000158865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239056Re-query CCDS DB by Protein ID:ENSMUSP00000158865
Original member Current member NCBI NM_009167.5 NP_033193.3 Accepted alive Link to Nucleotide Sequence:NM_009167.5Link to Protein Sequence:NP_033193.3Re-query CCDS DB by Nucleotide ID:NM_009167Re-query CCDS DB by Protein ID:NP_033193Link to BLAST:NP_033193.3

Chromosomal Locations for CCDS 49265.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51431153 51431281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51442690 51442985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51447890 51448048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51449227 51449314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51451490 51451640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51461318 51461444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51466514 51466565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51472803 51472856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51480099 51480218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51482882 51482945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51516525 51516595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51566971 51567444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGCTTCCACGCACCAAGTACAACCGCTTCAGGAATGACTCGGTGACATCGGTCGATGACCTTCTCCACA
GCCTGTCGGTGAGCGGCAGCGGCGGCAAGGTCTCGGCGGAGCCCGCGGCGAGCCCCTACCTGGTGTCGGG
CGAGGCGCTGCGCAAGGCGCCGGACGATGGGCCCGGCAGCCTGGGCCACCTGCTCCACAAGGTGTCCCAC
TTGAAACTCTCCAGCTCCGGCCTGCGTGGCCTGTCGTCGGCCGCCCGGGAGCGGGCAGGAGCGCGGCTCT
CGGGCAGCTGCAGCGCGCCCAGCCTGGCGGCCCCGGACGGCGGCAGCGCGACCCCCGGGTCCCGCGCCCC
GGCCGCCAGCATGAGTGCCACCAGGAAGAGCCGGGCCGGCGACGAGCCACTGCCCAGGCCCCCTCGGGGC
GCGCCGCACACCAGCGATCAGGTGCTGGGGCCGGGAGTCACCTATGTGGTCAAGTACTTGGGCTGCATCG
AAGTTCTGCGCTCAATGAGGTCTCTTGACTTCAGTACAAGAACTCAGGTTACCAGGGAAGCCATCAGCCG
TGTCTGCGAAGCTGTGCCAGGTGCCAAAGGAGCCCTCAAGAAGAGAAAGCCGCCGAGTAAGATGCTGTCC
AGCATCCTGGGGAAGAGCAACCTCCAGTTCGCAGGGATGAGCATCTCCCTGACCATCTCCACCGCCAGCC
TGAATCTGCGCACTCCTGACTCCAAACAGATCATAGCGAACCATCATATGCGGTCTATCTCTTTTGCCTC
AGGGGGAGACCCGGACACAACGGACTATGTTGCCTATGTCGCTAAGGACCCTGTCAATCGCAGAGCTTGC
CACATTCTGGAATGCTGTGACGGGCTAGCCCAAGATGTCATTGGCTCCATCGGACAAGCCTTTGAACTCC
GGTTCAAACAGTATTTGCAGTGCCCTTCCAAGGTTCCTGCCCTCCAGGACCGAATGCAGAGTCTGGATGA
GCCATGGACTGAAGAAGAGGGAGATGGCCCTGATCACCCATACTACAACAGCGTTCCCACCAAGATGCCT
CCCCCAGGGGGGTTTCTGGATGCTCGATTGAAAGGCAGACCCCACGCTCCTGAGGCAGCCCAGTTTGCAG
GAAAAGAGCAAACTTATTACCAGGGAAGACACTTAGGAGATACATTTGGTGAAGACTGGCAGCGAGCACC
CACCAGGCAAGGCTCCTTGGACATCTATAGCACAGCAGAAGGGAAAACTCACATGGTTCCTGTAGGAGAA
ACACCAACCTATGTCAACACCCAGCCAGTCCCACCACAGGTGTGGCCAGCAGCAACCAGCAGCACTGAGA
GCAGCCCACGGAAGGACCTCTTTGACATGAAGCCCTTTGAAGATGCCCTGAGAAACCAGCCCCTGGGCCC
CATGTTGAGCAAAGCCGCGTCTGTGGAGTGCATCAGCCCGGTCACACCCAGAGCCCCGGATGCCAGGATG
CTGGAGGAGCTTAACGCTGAGCCCTGGTACCAAGGAGAGATGAGCAGGAAGGAGGCAGAGGCCCTGCTAC
GGGAAGATGGAGACTTCCTAGTGAGGAAGAGTACCACCAACCCCGGCTCCTTTGTCCTCACAGGCATGCA
CAATGGGCAGGCCAAGCACCTGCTGCTGGTGGACCCGGAAGGCACGATCCGGACGAAGGACAGGGTCTTT
GACAGCATCAGCCACCTCATCAATTACCACCTCGAGAGCAGCCTGCCCATTGTCTCTGCCGGGAGTGAGC
TTTGTCTCCAGCAACCAGTGGAGAGGAAACCCTGA

Translation (594 aa):
MLPRTKYNRFRNDSVTSVDDLLHSLSVSGSGGKVSAEPAASPYLVSGEALRKAPDDGPGSLGHLLHKVSH
LKLSSSGLRGLSSAARERAGARLSGSCSAPSLAAPDGGSATPGSRAPAASMSATRKSRAGDEPLPRPPRG
APHTSDQVLGPGVTYVVKYLGCIEVLRSMRSLDFSTRTQVTREAISRVCEAVPGAKGALKKRKPPSKMLS
SILGKSNLQFAGMSISLTISTASLNLRTPDSKQIIANHHMRSISFASGGDPDTTDYVAYVAKDPVNRRAC
HILECCDGLAQDVIGSIGQAFELRFKQYLQCPSKVPALQDRMQSLDEPWTEEEGDGPDHPYYNSVPTKMP
PPGGFLDARLKGRPHAPEAAQFAGKEQTYYQGRHLGDTFGEDWQRAPTRQGSLDIYSTAEGKTHMVPVGE
TPTYVNTQPVPPQVWPAATSSTESSPRKDLFDMKPFEDALRNQPLGPMLSKAASVECISPVTPRAPDARM
LEELNAEPWYQGEMSRKEAEALLREDGDFLVRKSTTNPGSFVLTGMHNGQAKHLLLVDPEGTIRTKDRVF
DSISHLINYHLESSLPIVSAGSELCLQQPVERKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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