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Report for CCDS7507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7507.1 Public Homo sapiens 10 LZTS2 24 110 108 CCDS HistoryNCBI Gene:84445Re-query CCDS DB by CCDS ID:7507.1Re-query CCDS DB by GeneID:84445See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370220.1 ENSP00000359240.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370220.1Link to Ensembl Protein Viewer:ENSP00000359240.1Re-query CCDS DB by Nucleotide ID:ENST00000370220Re-query CCDS DB by Protein ID:ENSP00000359240
Original member Current member EBI ENST00000370223.7 ENSP00000359243.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370223.7Link to Ensembl Protein Viewer:ENSP00000359243.3Re-query CCDS DB by Nucleotide ID:ENST00000370223Re-query CCDS DB by Protein ID:ENSP00000359243
Original member Current member EBI ENST00000454422.2 ENSP00000416972.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454422.2Link to Ensembl Protein Viewer:ENSP00000416972.2Re-query CCDS DB by Nucleotide ID:ENST00000454422Re-query CCDS DB by Protein ID:ENSP00000416972
Original member Current member NCBI NM_001318099.2 NP_001305028.1 Accepted alive Link to Nucleotide Sequence:NM_001318099.2Link to Protein Sequence:NP_001305028.1Re-query CCDS DB by Nucleotide ID:NM_001318099Re-query CCDS DB by Protein ID:NP_001305028Link to BLAST:NP_001305028.1
Original member Current member NCBI NM_001318100.2 NP_001305029.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318100.2Link to Protein Sequence:NP_001305029.1Re-query CCDS DB by Nucleotide ID:NM_001318100Re-query CCDS DB by Protein ID:NP_001305029Link to BLAST:NP_001305029.1
Original member Current member NCBI NM_001394950.1 NP_001381879.1 Accepted alive Link to Nucleotide Sequence:NM_001394950.1Link to Protein Sequence:NP_001381879.1Re-query CCDS DB by Nucleotide ID:NM_001394950Re-query CCDS DB by Protein ID:NP_001381879Link to BLAST:NP_001381879.1
Original member Current member NCBI NM_001394951.1 NP_001381880.1 Accepted alive Link to Nucleotide Sequence:NM_001394951.1Link to Protein Sequence:NP_001381880.1Re-query CCDS DB by Nucleotide ID:NM_001394951Re-query CCDS DB by Protein ID:NP_001381880Link to BLAST:NP_001381880.1
Original member Current member NCBI NM_001394952.1 NP_001381881.1 Accepted alive Link to Nucleotide Sequence:NM_001394952.1Link to Protein Sequence:NP_001381881.1Re-query CCDS DB by Nucleotide ID:NM_001394952Re-query CCDS DB by Protein ID:NP_001381881Link to BLAST:NP_001381881.1
Original member Current member NCBI NM_032429.4 NP_115805.1 Accepted alive Link to Nucleotide Sequence:NM_032429.4Link to Protein Sequence:NP_115805.1Re-query CCDS DB by Nucleotide ID:NM_032429Re-query CCDS DB by Protein ID:NP_115805Link to BLAST:NP_115805.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305028.1 669 Q9BRK4 669 100% 0 0
NP_001305029.1 669 Q9BRK4 669 100% 0 0
NP_001381879.1 669 Q9BRK4 669 100% 0 0
NP_001381880.1 669 Q9BRK4 669 100% 0 0
NP_001381881.1 669 Q9BRK4 669 100% 0 0
NP_115805.1 669 Q9BRK4 669 100% 0 0

Chromosomal Locations for CCDS 7507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101002539 101002946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101003507 101004166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101005458 101005715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101006485 101007168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGCCATTGTGCAGACTCTGCCAGTGCCACTGGAGCCTGCTCCTGAAGCTGCCACTGCCCCACAAGCTC
CAGTCATGGGTAGTGTGAGCAGCCTTATCTCAGGCCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCA
CCACGGCCCTCCTGGGCCCACCTTCTTCCGCCAGCAGGATGGCCTGCTACGGGGTGGCTATGAGGCACAG
GAGCCGCTGTGCCCAGCTGTGCCCCCTAGGAAGGCTGTCCCTGTCACCAGCTTCACCTACATCAATGAGG
ACTTCCGGACAGAGTCACCCCCCAGCCCAAGCAGTGATGTTGAGGATGCCCGAGAGCAGCGGGCACACAA
TGCCCACCTCCGCGGCCCACCACCAAAGCTCATCCCTGTCTCTGGAAAGCTGGAGAAGAACATGGAGAAG
ATCCTGATCCGCCCAACAGCCTTCAAGCCAGTGCTGCCCAAACCTCGAGGGGCTCCGTCCCTGCCTAGCT
TCATGGGTCCTCGGGCCACCGGGCTGTCTGGGAGCCAGGGCAGCCTGACGCAGCTGTTTGGGGGCCCTGC
CTCCTCCTCCTCCTCTTCCTCCTCCTCTTCAGCTGCTGACAAACCCCTGGCATTTAGTGGCTGGGCCAGT
GGCTGCCCATCAGGGACGCTATCCGACTCTGGCCGAAACTCACTGTCCAGCCTGCCCACCTACAGCACCG
GAGGTGCCGAGCCAACCACCAGCTCCCCAGGCGGGCACCTGCCTTCCCATGGCTCTGGGCGAGGGGCACT
GCCTGGGCCAGCCCGAGGGGTCCCTACTGGGCCCTCCCACTCAGACAGTGGCCGGTCCTCCTCCAGCAAG
AGCACAGGCTCCCTAGGGGGCCGTGTGGCTGGGGGGCTTTTGGGCAGTGGTACTCGGGCCTCCCCTGACA
GCAGCTCCTGTGGGGAGCGCTCACCACCACCCCCGCCTCCACCTCCTTCGGATGAGGCCCTGCTGCACTG
TGTCCTGGAAGGAAAGCTCCGAGACCGGGAGGCAGAGCTTCAGCAGCTGCGGGACAGTCTGGACGAGAAT
GAGGCTACCATGTGCCAGGCATACGAGGAGCGGCAGCGGCACTGGCAGCGAGAGCGTGAGGCCCTGCGAG
AGGACTGTGCGGCCCAGGCACAGCGGGCACAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCT
GCAGCAGGAGAAGCGGCAATTGCAGGACGACTTCGCACAGCTGCTGCAGGAGCGCGAACAGCTGGAGCGG
CGCTGCGCCACCTTGGAGCGGGAGCAGCGGGAGCTCGGGCCGAGGCTTGAGGAGACCAAGTGGGAGGTGT
GCCAGAAATCAGGCGAGATCTCCCTGCTGAAGCAGCAGCTGAAAGAGTCTCAGGCAGAGCTGGTGCAGAA
GGGCAGCGAGCTGGTGGCTCTGCGGGTGGCGCTGCGGGAGGCCCGTGCTACGCTGCGGGTCAGTGAGGGC
CGTGCGCGGGGTCTACAGGAGGCCGCCCGAGCTCGGGAGCTGGAGCTGGAAGCCTGTTCCCAGGAGCTGC
AGCGACACCGCCAGGAAGCTGAGCAGCTGCGGGAGAAAGCTGGGCAGTTGGATGCTGAGGCGGCCGGACT
CCGGGAGCCCCCTGTGCCACCTGCCACCGCTGACCCATTCCTCCTGGCAGAGAGTGATGAGGCCAAAGTG
CAGCGGGCAGCAGCCGGGGTTGGGGGCAGCTTGCGGGCCCAGGTGGAGCGATTGCGGGTGGAGCTGCAGC
GGGAGCGGCGGCGGGGTGAGGAGCAGCGGGACAGCTTTGAGGGGGAGCGGCTGGCCTGGCAGGCAGAGAA
GGAGCAGGTGATCCGCTACCAGAAGCAGCTGCAGCACAACTACATCCAGATGTACCGGCGCAACCGGCAG
CTAGAGCAGGAGCTGCAGCAGCTCAGCCTGGAGCTGGAGGCCCGGGAGCTCGCTGACCTGGGCCTGGCCG
AGCAGGCCCCCTGCATCTGCCTGGAGGAGATCACTGCTACTGAGATCTAG

Translation (669 aa):
MAIVQTLPVPLEPAPEAATAPQAPVMGSVSSLISGRPCPGGPAPPRHHGPPGPTFFRQQDGLLRGGYEAQ
EPLCPAVPPRKAVPVTSFTYINEDFRTESPPSPSSDVEDAREQRAHNAHLRGPPPKLIPVSGKLEKNMEK
ILIRPTAFKPVLPKPRGAPSLPSFMGPRATGLSGSQGSLTQLFGGPASSSSSSSSSSAADKPLAFSGWAS
GCPSGTLSDSGRNSLSSLPTYSTGGAEPTTSSPGGHLPSHGSGRGALPGPARGVPTGPSHSDSGRSSSSK
STGSLGGRVAGGLLGSGTRASPDSSSCGERSPPPPPPPPSDEALLHCVLEGKLRDREAELQQLRDSLDEN
EATMCQAYEERQRHWQREREALREDCAAQAQRAQRAQQLLQLQVFQLQQEKRQLQDDFAQLLQEREQLER
RCATLEREQRELGPRLEETKWEVCQKSGEISLLKQQLKESQAELVQKGSELVALRVALREARATLRVSEG
RARGLQEAARARELELEACSQELQRHRQEAEQLREKAGQLDAEAAGLREPPVPPATADPFLLAESDEAKV
QRAAAGVGGSLRAQVERLRVELQRERRRGEEQRDSFEGERLAWQAEKEQVIRYQKQLQHNYIQMYRRNRQ
LEQELQQLSLELEARELADLGLAEQAPCICLEEITATEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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