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Report for CCDS86591.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86591.2 Public Homo sapiens 17 SLFN12L 24 110 108 CCDS HistoryNCBI Gene:100506736Re-query CCDS DB by CCDS ID:86591.2Re-query CCDS DB by GeneID:100506736See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 86591.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000628453.4 ENSP00000487397.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000628453.4Link to Ensembl Protein Viewer:ENSP00000487397.4Re-query CCDS DB by Nucleotide ID:ENST00000628453Re-query CCDS DB by Protein ID:ENSP00000487397
Original member Current member NCBI NM_001363830.2 NP_001350759.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363830.2Link to Protein Sequence:NP_001350759.2Re-query CCDS DB by Nucleotide ID:NM_001363830Re-query CCDS DB by Protein ID:NP_001350759Link to BLAST:NP_001350759.2

Chromosomal Locations for CCDS 86591.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35474923 35475485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35478075 35478185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35479117 35480195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35522279 35522364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGAGAAGATCAGGAATGTGTTTCACTGTGAGGCACACAGAATTCTCTACATTTGTGAAAGTCAGTTTC
TGAGGAATTTCATCAGAAAAGAATTTCTGCGTGGAAATGGCTTAGCTGCTGGGAAAATGAACATCAGTAT
TGATTTAGACACAAACTATGCTGAGCTGGTTCTAAATGTGGGAAGAGTCACTCTTGGAGAGAACAATAGA
AAAAAAATGAAGGATTGTCAACTGAGAAAACAGCAGAATGAAAATGTCTCACGAGCTGTGTGTGCTCTGC
TGAATTCTGGAGGGGGAGTGATCAAGGCTGAAGTTGAGAATAAAGGCTATAGTTATAAAAAAGATGGAAT
AGGGCTAGATTTGGAAAATTCTTTTAGTAACATGCTGCCATTTGTTCCTAATTTCCTGGACTTCATGCAG
AATGGTAACTACTTTCACATTTTTGTGAAATCATGGAGCTTGGAAACCTCTGGTCCGCAGATTGCCACGT
TGAGCTCCAGTTTGTACAAGAGAGATGTAACGTCTGCAAAAGTCATGAATGCTTCTGCTGCACTGGAGTT
CCTCAAAGACATGGAAAAAACTGGAGGGAGAGCATATTTAAGACCAGAATTCCCTGCAAAAAGGGCCTGT
GTTGATGTACAAGAAGAAAGTAACATGGAAGCCTTGGCTGCTGATTTTTTTAACAGAACAGAACTTGGTT
ATAAAGAAAAATTGACCTTTACTGAATCCACACACGTTGAAATAAAAAACTTCTCGACTGAAAAGTTGTT
ACAACGAATTACAGAGATTCTCCCTCAATATGTTTCTGCATTTGCAAATACTGATGGAGGATATTTATTC
GTTGGTCTAAATGAAGATAAAGAAGTAATTGGCTTTAAAGCAGAGAAGAGTTATCTTACTAAGTTAGAAG
AAGTAACAAAAAATTCCATTGGGAAACTGCCTGTGCATCACTTCTGTGTGGAGAAGGGGACGATAAATTA
CTTATGCAAATTCCTTGGAGTATATGATAAAGGAAGGCTTTGTGGATATGTGTATGCACTCAGAGTGGAA
CGCTTCTGCTGTGCAGTGTTTGCTAAAAAGCCTGATTCCTGGCACGTGAAAGATAACAGAGTTAAGCAGT
TGACCGAGAAGGAATGGATCCAGTTCATGGTGGATTCAGAACCAGTATGTGAGGAACTGCCCTCTCCAGC
AAGTACATCATCACCTGTCTCCCAGAGTTATCCTCTTCGTGAATATATTAACTTCAAAATTCAGCCACTG
AGATATCACCTTCCAGGGCTATCAGAAAAGATAACTTGTGCTCCAAAAACCTTCTGCAGAAATCTGTTCT
CACAACATGAAGGACTTAAGCAATTAATATGTGAAGAAATGGGCTCTGTCAATAAGGGCTCACTGATCTT
CTCTAGGAGCTGGTCTTTGGATCTGGGCTTGCAAGAGAACCACAAAGTCCTCTGTGATGCTCTTCTGATT
TCCCAGGACAAGCCTCCAGTCCTATACACCTTCCACATGGTACAGGATGAGGAGTTTAAAGACTATTCTA
CACAAACTGCCCAAACTTTAAAACAGAAGCTGGCAAAAATTGGTGGTTACACTAAAAAAGTGTGTGTCAT
GACAAAGATCTTCTACTTGAGCCCTGAAGGCAAGACAAGCTGCCAGTATGATTTAAACTCGCAAGTAATT
TACCCTGAATCCTACTATTGGACAACAGCTCAAACAATGAAAGACTTGGAAAAGGCCCTTTCAAATATCT
TACCTAAGGAGAATCAAATCTTTTTGTTTGTTTGTTTGTTTCGTTTTTGTTTGTTTGTTTGTTGGTTTGT
TTGTTTTTTCTTGAGATGA

Translation (612 aa):
MEKIRNVFHCEAHRILYICESQFLRNFIRKEFLRGNGLAAGKMNISIDLDTNYAELVLNVGRVTLGENNR
KKMKDCQLRKQQNENVSRAVCALLNSGGGVIKAEVENKGYSYKKDGIGLDLENSFSNMLPFVPNFLDFMQ
NGNYFHIFVKSWSLETSGPQIATLSSSLYKRDVTSAKVMNASAALEFLKDMEKTGGRAYLRPEFPAKRAC
VDVQEESNMEALAADFFNRTELGYKEKLTFTESTHVEIKNFSTEKLLQRITEILPQYVSAFANTDGGYLF
VGLNEDKEVIGFKAEKSYLTKLEEVTKNSIGKLPVHHFCVEKGTINYLCKFLGVYDKGRLCGYVYALRVE
RFCCAVFAKKPDSWHVKDNRVKQLTEKEWIQFMVDSEPVCEELPSPASTSSPVSQSYPLREYINFKIQPL
RYHLPGLSEKITCAPKTFCRNLFSQHEGLKQLICEEMGSVNKGSLIFSRSWSLDLGLQENHKVLCDALLI
SQDKPPVLYTFHMVQDEEFKDYSTQTAQTLKQKLAKIGGYTKKVCVMTKIFYLSPEGKTSCQYDLNSQVI
YPESYYWTTAQTMKDLEKALSNILPKENQIFLFVCLFRFCLFVCWFVCFFLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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