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Report for CCDS6110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6110.1 Public Homo sapiens 8 HTRA4 24 110 108 CCDS HistoryNCBI Gene:203100Re-query CCDS DB by CCDS ID:6110.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302495.5 ENSP00000305919.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302495.5Link to Ensembl Protein Viewer:ENSP00000305919.4Re-query CCDS DB by Nucleotide ID:ENST00000302495Re-query CCDS DB by Protein ID:ENSP00000305919
Original member Current member NCBI NM_153692.4 NP_710159.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153692.4Link to Protein Sequence:NP_710159.1Re-query CCDS DB by Nucleotide ID:NM_153692Re-query CCDS DB by Protein ID:NP_710159Link to BLAST:NP_710159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_710159.1 476 P83105 476 100% 0 0

Chromosomal Locations for CCDS 6110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 38974264 38974729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38975031 38975130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38976535 38976739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38977953 38978147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38979215 38979247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38981653 38981767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38982498 38982555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38982953 38983048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38987936 38988098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGATTAGACCTCAGCTGCGGACCGCGGGGCTGGGACGATGCCTCCTGCCGGGGCTGCTGCTGCTCCTGG
TGCCCGTCCTCTGGGCCGGGGCTGAAAAGCTACATACCCAGCCCTCCTGCCCCGCGGTCTGCCAGCCCAC
GCGCTGCCCCGCGCTGCCCACCTGCGCGCTGGGGACCACGCCGGTGTTCGACCTGTGCCGCTGTTGCCGC
GTCTGCCCCGCGGCCGAGCGTGAAGTCTGCGGCGGGGCGCAGGGCCAACCGTGCGCCCCGGGGCTGCAGT
GCCTCCAGCCGCTGCGCCCCGGGTTCCCCAGCACCTGCGGTTGCCCGACGCTGGGAGGGGCCGTGTGCGG
CAGCGACAGGCGCACCTACCCCAGCATGTGCGCGCTCCGGGCCGAAAACCGCGCCGCGCGCCGCCTGGGC
AAGGTCCCGGCCGTGCCTGTGCAGTGGGGGAACTGCGGGGATACAGGGACCAGAAGCGCAGGCCCGCTCA
GGAGGAATTACAACTTCATCGCCGCGGTGGTGGAGAAGGTGGCGCCATCGGTGGTTCACGTGCAGCTGTG
GGGCAGGTTACTTCACGGCAGCAGGCTTGTTCCTGTGTACAGTGGCTCTGGGTTCATAGTGTCTGAGGAC
GGGCTCATTATTACCAATGCCCATGTTGTCAGGAACCAGCAGTGGATTGAGGTGGTGCTCCAGAATGGGG
CCCGTTATGAAGCTGTTGTCAAGGATATTGACCTTAAATTGGATCTTGCGGTGATTAAGATTGAATCAAA
TGCTGAACTTCCTGTACTGATGCTGGGAAGATCATCTGACCTTCGGGCTGGAGAGTTTGTGGTGGCTTTG
GGCAGCCCATTTTCTCTGCAGAACACAGCTACTGCAGGAATTGTCAGCACCAAACAGCGAGGGGGCAAAG
AACTGGGGATGAAGGATTCAGATATGGACTACGTCCAGATTGATGCCACAATTAATTATGGGAATTCTGG
TGGTCCTCTGGTGAACTTGGATGGTGATGTGATTGGCGTCAATTCATTGAGGGTGACTGATGGAATCTCC
TTTGCAATTCCTTCAGATCGAGTTAGGCAGTTCTTGGCAGAATACCATGAGCACCAGATGAAAGGAAAGG
CGTTTTCAAATAAGAAATATCTGGGTCTGCAAATGCTGTCCCTCACTGTGCCCCTTAGTGAAGAATTGAA
AATGCATTATCCAGATTTCCCTGATGTGAGTTCTGGGGTTTATGTATGTAAAGTGGTTGAAGGAACAGCT
GCTCAAAGCTCTGGATTGAGAGATCACGATGTAATTGTCAACATAAATGGGAAACCTATTACTACTACAA
CTGATGTTGTTAAAGCTCTTGACAGTGATTCCCTTTCCATGGCTGTTCTTCGGGGAAAAGATAATTTGCT
CCTGACAGTCATACCTGAAACAATCAATTAA

Translation (476 aa):
MIRPQLRTAGLGRCLLPGLLLLLVPVLWAGAEKLHTQPSCPAVCQPTRCPALPTCALGTTPVFDLCRCCR
VCPAAEREVCGGAQGQPCAPGLQCLQPLRPGFPSTCGCPTLGGAVCGSDRRTYPSMCALRAENRAARRLG
KVPAVPVQWGNCGDTGTRSAGPLRRNYNFIAAVVEKVAPSVVHVQLWGRLLHGSRLVPVYSGSGFIVSED
GLIITNAHVVRNQQWIEVVLQNGARYEAVVKDIDLKLDLAVIKIESNAELPVLMLGRSSDLRAGEFVVAL
GSPFSLQNTATAGIVSTKQRGGKELGMKDSDMDYVQIDATINYGNSGGPLVNLDGDVIGVNSLRVTDGIS
FAIPSDRVRQFLAEYHEHQMKGKAFSNKKYLGLQMLSLTVPLSEELKMHYPDFPDVSSGVYVCKVVEGTA
AQSSGLRDHDVIVNINGKPITTTTDVVKALDSDSLSMAVLRGKDNLLLTVIPETIN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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