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Report for CCDS12194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12194.1 Public Homo sapiens 19 CCL25 24 110 108 CCDS HistoryNCBI Gene:6370Re-query CCDS DB by CCDS ID:12194.1Re-query CCDS DB by GeneID:6370See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12194.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315626.6 ENSP00000324756.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315626.6Link to Ensembl Protein Viewer:ENSP00000324756.6Re-query CCDS DB by Nucleotide ID:ENST00000315626Re-query CCDS DB by Protein ID:ENSP00000324756
Original member Current member EBI ENST00000390669.7 ENSP00000375086.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000390669.7Link to Ensembl Protein Viewer:ENSP00000375086.3Re-query CCDS DB by Nucleotide ID:ENST00000390669Re-query CCDS DB by Protein ID:ENSP00000375086
Original member Current member EBI ENST00000680646.1 ENSP00000504875.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680646.1Link to Ensembl Protein Viewer:ENSP00000504875.1Re-query CCDS DB by Nucleotide ID:ENST00000680646Re-query CCDS DB by Protein ID:ENSP00000504875
Original member Current member EBI ENST00000680506.1 ENSP00000505422.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680506.1Link to Ensembl Protein Viewer:ENSP00000505422.1Re-query CCDS DB by Nucleotide ID:ENST00000680506Re-query CCDS DB by Protein ID:ENSP00000505422
Original member Current member NCBI NM_001394634.1 NP_001381563.1 Accepted alive Link to Nucleotide Sequence:NM_001394634.1Link to Protein Sequence:NP_001381563.1Re-query CCDS DB by Nucleotide ID:NM_001394634Re-query CCDS DB by Protein ID:NP_001381563Link to BLAST:NP_001381563.1
Original member Current member NCBI NM_001394635.1 NP_001381564.1 Accepted alive Link to Nucleotide Sequence:NM_001394635.1Link to Protein Sequence:NP_001381564.1Re-query CCDS DB by Nucleotide ID:NM_001394635Re-query CCDS DB by Protein ID:NP_001381564Link to BLAST:NP_001381564.1
Original member Current member NCBI NM_001394636.1 NP_001381565.1 Accepted alive Link to Nucleotide Sequence:NM_001394636.1Link to Protein Sequence:NP_001381565.1Re-query CCDS DB by Nucleotide ID:NM_001394636Re-query CCDS DB by Protein ID:NP_001381565Link to BLAST:NP_001381565.1
Original member Current member NCBI NM_001394637.1 NP_001381566.1 Accepted alive Link to Nucleotide Sequence:NM_001394637.1Link to Protein Sequence:NP_001381566.1Re-query CCDS DB by Nucleotide ID:NM_001394637Re-query CCDS DB by Protein ID:NP_001381566Link to BLAST:NP_001381566.1
Original member Current member NCBI NM_005624.4 NP_005615.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005624.4Link to Protein Sequence:NP_005615.2Re-query CCDS DB by Nucleotide ID:NM_005624Re-query CCDS DB by Protein ID:NP_005615Link to BLAST:NP_005615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381563.1 150 O15444-1 150 100% 0 0
NP_001381564.1 150 O15444-1 150 100% 0 0
NP_001381565.1 150 O15444-1 150 100% 0 0
NP_001381566.1 150 O15444-1 150 100% 0 0
NP_005615.2 150 O15444-1 150 100% 0 0

Chromosomal Locations for CCDS 12194.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8053050 8053122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8056152 8056269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8056366 8056499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8057801 8057920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8062218 8062225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGAACCTGTGGCTCCTGGCCTGCCTGGTGGCCGGCTTCCTGGGAGCCTGGGCCCCCGCTGTCCACACCC
AAGGTGTCTTTGAGGACTGCTGCCTGGCCTACCACTACCCCATTGGGTGGGCTGTGCTCCGGCGCGCCTG
GACTTACCGGATCCAGGAGGTGAGCGGGAGCTGCAATCTGCCTGCTGCGATATTCTACCTCCCCAAGAGA
CACAGGAAGGTGTGTGGGAACCCCAAAAGCAGGGAGGTGCAGAGAGCCATGAAGCTCCTGGATGCTCGAA
ATAAGGTTTTTGCAAAGCTCCACCACAACACGCAGACCTTCCAAGCAGGCCCTCATGCTGTAAAGAAGTT
GAGTTCTGGAAACTCCAAGTTATCATCGTCCAAGTTTAGCAATCCCATCAGCAGCAGTAAGAGGAATGTC
TCCCTCCTGATATCAGCTAATTCAGGACTGTGA

Translation (150 aa):
MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKR
HRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSGNSKLSSSKFSNPISSSKRNV
SLLISANSGL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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