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Report for CCDS57633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57633.1 Public Mus musculus 8 Ccl17 23 108 98 CCDS HistoryNCBI Gene:20295Re-query CCDS DB by CCDS ID:57633.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034232.2 ENSMUSP00000034232.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034232.2Link to Ensembl Protein Viewer:ENSMUSP00000034232.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000034232Re-query CCDS DB by Protein ID:ENSMUSP00000034232
Original member Current member NCBI NM_011332.3 NP_035462.2 Accepted alive Link to Nucleotide Sequence:NM_011332.3Link to Protein Sequence:NP_035462.2Re-query CCDS DB by Nucleotide ID:NM_011332Re-query CCDS DB by Protein ID:NP_035462Link to BLAST:NP_035462.2

Chromosomal Locations for CCDS 57633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94810472 94810571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94811186 94811303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94811760 94811853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGAAGACCTTCACCTCAGCTTTTGGTACCATGAGGTCACTTCAGATGCTGCTCCTGGCTGCTCTGCTTC
TGGGGACTTTTCTGCAGCATGCCAGAGCTGCTCGAGCCACCAATGTAGGCCGAGAGTGCTGCCTGGATTA
CTTCAAAGGGGCCATTCCTATCAGGAAGTTGGTGAGCTGGTATAAGACCTCAGTGGAGTGTTCCAGGGAT
GCCATCGTGTTTCTGACTGTCCAGGGCAAGCTCATCTGTGCAGACCCCAAAGACAAACATGTGAAGAAGG
CCATCAGATTGGTGAAAAACCCAAGGCCATGA

Translation (103 aa):
MKTFTSAFGTMRSLQMLLLAALLLGTFLQHARAARATNVGRECCLDYFKGAIPIRKLVSWYKTSVECSRD
AIVFLTVQGKLICADPKDKHVKKAIRLVKNPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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