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Report for CCDS18446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18446.1 Public Mus musculus 4 Scp2 23 108 98 CCDS HistoryNCBI Gene:20280Re-query CCDS DB by CCDS ID:18446.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030340.14 ENSMUSP00000030340.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030340.14Link to Ensembl Protein Viewer:ENSMUSP00000030340.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030340Re-query CCDS DB by Protein ID:ENSMUSP00000030340
Original member Current member NCBI NM_011327.4 NP_035457.1 Accepted alive Link to Nucleotide Sequence:NM_011327.4Link to Protein Sequence:NP_035457.1Re-query CCDS DB by Nucleotide ID:NM_011327Re-query CCDS DB by Protein ID:NP_035457Link to BLAST:NP_035457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035457.1 547 P32020-1 547 100% 0 0

Chromosomal Locations for CCDS 18446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108044750 108044845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108047590 108047669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108055439 108055568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108063886 108063988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108071257 108071410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108074356 108074463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108085155 108085302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108087012 108087162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108091237 108091323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108092824 108092887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108098022 108098148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108102291 108102355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108105044 108105175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108107617 108107688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108112227 108112284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108118379 108118447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGCCTTCTGTCGCTTTGAAATCTCCGCGCCTGCGCCGGGTGTTCGTGGTCGGCGTTGGCATGACCAAGT
TCATGAAGCCTGGAGGTGAGAACTCAAGAGACTATCCTGATATGGCAAAGGAAGCAGGCCAGAAGGCATT
GGAAGATGCACAGATCCCTTACTCCGCAGTGGAACAGGCATGCGTTGGCTATGTGTATGGTGATTCCACC
AGTGGGCAGAGGGCTATCTATCATAGTTTGGGACTGACTGGCATTCCTATAATTAATGTCAACAATAACT
GTTCTACTGGTTCGACTGCTTTGTTTATGGCCCATCAACTGATTCAAGGAGGCTTGGCAAATTGTGTGTT
GGCTCTTGGGTTTGAGAAGATGGAGAGGGGATCCATTGGAACAAAATTCTCAGATCGGACCACTCCAACT
GATAAACATATTGAAGTCTTGATCGATAAGTATGGATTGTCTGCACATCCGATTACTCCTCAGATGTTTG
GGTATGCTGGGAAAGAACATATGGAAAAATATGGAACAAAAGTTGAACACTTTGCAAAAATTGGATGGAA
AAATCATAAACACTCAGTTAATAACACGTATTCCCAGTTCCAAGATGAATACAGCTTAGAAGAAGTAATG
AAATCAAAACCAGTTTTCGATTTTCTGACTATCTTGCAATGCTGCCCCACCTCAGATGGTGCCGCTGCCG
CGATTCTGTCCAGCGAGGAGTTTGTGCAGCAGTACGGCCTGCAGTCCAAAGCGGTGGAGATTGTGGCCCA
GGAGATGATGACTGACTTACCCAGTACGTTTGAAGAGAAAAGTATTATTAAAGTGGTTGGCTATGATATG
AGTAAAGAAGCTGCCAGGAGATGCTATGAGAAGTCCGGCCTGACACCCAACGATGTCGACGTGATAGAGC
TTCACGATTGCTTCTCTGTCAATGAACTCATCACTTACGAAGCACTGGGGCTCTGTCCAGAAGGACAAGG
TGGAACCCTGGTGGACAGAGGGGACAACACTTACGGAGGAAAGTGGGTCATCAACCCTAGTGGAGGCCTC
ATCTCAAAGGGACACCCACTGGGCGCAACAGGTCTGGCTCAGTGCGCGGAGCTCTGCTGGCAGCTGAGAG
GCGAAGCCGGAAAGAGGCAGGTTCCCGGGGCAAAGGTGGCTCTGCAGCACAATCTAGGCCTCGGAGGAGC
TGTGGTTGTCACCCTCTACAGGATGGGTTTTCCCGAAGCTGCCAGCTCCTTCAGGACGCACCAGGTTTCA
GCTGCTCCCACCAGCTCTGCAGGGGATGGATTCAAGGCAAACCTCGTCTTTAAGGAGATTGAGAAGAAGC
TTGAAGAGGAAGGGGAACAGTTCGTGAAGAAAATCGGTGGCATTTTTGCCTTCAAAGTGAAAGATGGCCC
TGGAGGCAAAGAAGCTACCTGGGTGGTGGATGTGAAGAATGGCAAAGGATCTGTGCTTCCCAATTCAGAT
AAGAAGGCTGACTGCACAATCACCATGGCCGACTCAGACTTGCTGGCTTTGATGACTGGAAAAATGAACC
CTCAGTCGGCCTTCTTTCAAGGGAAACTGAAGATTGCTGGTAACATGGGACTGGCCATGAAACTACAGAA
CCTTCAGCTTCAGCCGGGCAAAGCTAAGCTGTGA

Translation (547 aa):
MPSVALKSPRLRRVFVVGVGMTKFMKPGGENSRDYPDMAKEAGQKALEDAQIPYSAVEQACVGYVYGDST
SGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAHQLIQGGLANCVLALGFEKMERGSIGTKFSDRTTPT
DKHIEVLIDKYGLSAHPITPQMFGYAGKEHMEKYGTKVEHFAKIGWKNHKHSVNNTYSQFQDEYSLEEVM
KSKPVFDFLTILQCCPTSDGAAAAILSSEEFVQQYGLQSKAVEIVAQEMMTDLPSTFEEKSIIKVVGYDM
SKEAARRCYEKSGLTPNDVDVIELHDCFSVNELITYEALGLCPEGQGGTLVDRGDNTYGGKWVINPSGGL
ISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAVVVTLYRMGFPEAASSFRTHQVS
AAPTSSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSD
KKADCTITMADSDLLALMTGKMNPQSAFFQGKLKIAGNMGLAMKLQNLQLQPGKAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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