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Report for CCDS2568.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2568.2 Public Homo sapiens 3 SSUH2 24 110 108 CCDS HistoryNCBI Gene:51066Re-query CCDS DB by CCDS ID:2568.2Re-query CCDS DB by GeneID:51066See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2568.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317371.8 ENSP00000324551.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317371.8Link to Ensembl Protein Viewer:ENSP00000324551.5Re-query CCDS DB by Nucleotide ID:ENST00000317371Re-query CCDS DB by Protein ID:ENSP00000324551
Original member Current member EBI ENST00000341795.7 ENSP00000339150.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341795.7Link to Ensembl Protein Viewer:ENSP00000339150.4Re-query CCDS DB by Nucleotide ID:ENST00000341795Re-query CCDS DB by Protein ID:ENSP00000339150
Original member Current member EBI ENST00000420394.5 ENSP00000390328.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420394.5Link to Ensembl Protein Viewer:ENSP00000390328.2Re-query CCDS DB by Nucleotide ID:ENST00000420394Re-query CCDS DB by Protein ID:ENSP00000390328
Original member Current member EBI ENST00000435138.5 ENSP00000412333.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435138.5Link to Ensembl Protein Viewer:ENSP00000412333.2Re-query CCDS DB by Nucleotide ID:ENST00000435138Re-query CCDS DB by Protein ID:ENSP00000412333
Original member Current member NCBI NM_001256749.3 NP_001243678.1 Accepted alive Link to Nucleotide Sequence:NM_001256749.3Link to Protein Sequence:NP_001243678.1Re-query CCDS DB by Nucleotide ID:NM_001256749Re-query CCDS DB by Protein ID:NP_001243678Link to BLAST:NP_001243678.1
Original member Current member NCBI NM_015931.4 NP_057015.2 Accepted alive Link to Nucleotide Sequence:NM_015931.4Link to Protein Sequence:NP_057015.2Re-query CCDS DB by Nucleotide ID:NM_015931Re-query CCDS DB by Protein ID:NP_057015Link to BLAST:NP_057015.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243678.1 302 Q9Y2M2-3 302 100% 0 0
NP_057015.2 302 Q9Y2M2-3 302 100% 0 0

Chromosomal Locations for CCDS 2568.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8619868 8620014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8623549 8623656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8625542 8625647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8626229 8626321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8627698 8627783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8629664 8629726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8630805 8630929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8632049 8632109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8633666 8633785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGACGGAGGAGGTGGCCCGGGAAGCCCTCCTCAGCTTTGTGGACTCTAAGTGCTGCTACAGCAGCACGG
TGGCTGGAGACCTCGTCATCCAGGAGCTGAAGCGGCAGACCCTCTGCAGGTACCGTCTGGAGACCTTTAG
TGAATCCAGGATAAGCGAGTGGACATTTCAACCCTTTACTAACCACTCTGTGGATGGGCCGCAAAGAGGC
GCCTCCCCCAGGCTCTGGGACATCAAGGTTCAAGGTCCTCCGATGTTTCAGGAAGACACCAGGAAGTTCC
AGGTCCCTCACTCGTCACTGGTCAAGGAATGCCACAAATGCCATGGGCGTGGGCGGTACAAGTGCAGCGG
CTGCCACGGGGCGGGCACGGTGCGGTGCCCATCCTGCTGCGGAGCCAAGCGCAAAGCCAAGCAGTCCCGG
AGATGTCAGCTGTGCGCGGGGTCCGGCAGGCGAAGATGCAGCACTTGCTCAGGGAGAGGGAACAAGACCT
GCGCCACCTGCAAGGGGGAGAAGAAGCTGTTGCACTTCATCCAGCTTGTCATCATGTGGAAGAACAGCTT
GTTTGAGTTTGTGTCTGAGCACCGGCTCAACTGCCCCAGGGAGCTCCTTGCTAAAGCCAAAGGAGAAAAC
CTCTTTAAGGATGAAAACTCGGTGGTGTACCCCATCGTGGACTTCCCTCTGCGAGACATCTCTCTTGCCT
CCCAGAGGGGCATTGCAGAGCACAGCGCTGCCTTGGCCTCCCGTGCCCGCGTCCTGCAGCAGCGCCAGAC
CATTGAGCTGATCCCCCTCACAGAAGTTCACTATTGGTACCAAGGAAAGACTTATGTCTACTACATCTAT
GGCACTGACCACCAGGTGTATGCGGTGGACTATCCTGAGCGGTATTGCTGTGGCTGTACCATCGTGTGA

Translation (302 aa):
MTEEVAREALLSFVDSKCCYSSTVAGDLVIQELKRQTLCRYRLETFSESRISEWTFQPFTNHSVDGPQRG
ASPRLWDIKVQGPPMFQEDTRKFQVPHSSLVKECHKCHGRGRYKCSGCHGAGTVRCPSCCGAKRKAKQSR
RCQLCAGSGRRRCSTCSGRGNKTCATCKGEKKLLHFIQLVIMWKNSLFEFVSEHRLNCPRELLAKAKGEN
LFKDENSVVYPIVDFPLRDISLASQRGIAEHSAALASRARVLQQRQTIELIPLTEVHYWYQGKTYVYYIY
GTDHQVYAVDYPERYCCGCTIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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