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Report for CCDS29917.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29917.2 Reviewed, update pending Mus musculus 19 Dclre1a 23 108 98 CCDS HistoryNCBI Gene:55947Re-query CCDS DB by CCDS ID:29917.2Re-query CCDS DB by GeneID:55947See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 29917.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The upstream start codon is well-conserved but is followed by frameshifting indels in other species, but it has a strong Kozak signal and is therefore expected to be used at some frequency in mouse.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 29917.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182276.1 ENSMUSP00000138290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182276.1Link to Ensembl Protein Viewer:ENSMUSP00000138290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182276Re-query CCDS DB by Protein ID:ENSMUSP00000138290
Original member NCBI NM_001360437.1 NP_001347366.1 Updated not alive Link to Nucleotide Sequence:NM_001360437.1Link to Protein Sequence:NP_001347366.1Re-query CCDS DB by Nucleotide ID:NM_001360437Re-query CCDS DB by Protein ID:NP_001347366
Current member NCBI NM_001360437.2 NP_001347366.2 Pending alive Link to Nucleotide Sequence:NM_001360437.2Link to Protein Sequence:NP_001347366.2Re-query CCDS DB by Nucleotide ID:NM_001360437Re-query CCDS DB by Protein ID:NP_001347366Link to BLAST:NP_001347366.2
Original member NCBI NM_018831.4 NP_061301.3 Updated not alive Link to Nucleotide Sequence:NM_018831.4Link to Protein Sequence:NP_061301.3Re-query CCDS DB by Nucleotide ID:NM_018831Re-query CCDS DB by Protein ID:NP_061301
Current member NCBI NM_018831.5 NP_061301.4 Pending alive Link to Nucleotide Sequence:NM_018831.5Link to Protein Sequence:NP_061301.4Re-query CCDS DB by Nucleotide ID:NM_018831Re-query CCDS DB by Protein ID:NP_061301Link to BLAST:NP_061301.4

Chromosomal Locations for CCDS 29917.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56529502 56529662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56531217 56531358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56537128 56537282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56538297 56538442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56540182 56540322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56541505 56541623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56542633 56542766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56544015 56545646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56546637 56547150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGGACTCTGAATTCACCAAAGACTGGTGCTGTACTCACAAAAATCATTTGGCCATGTTAGAAGACACGT
TTTGGGAAGAAGAAATCTGGGAATATAAATCTAAAAGAAAGCCCAAACCCGTACATCCAAATAATTGTTC
TGAAAATATTTCAGAATCTGTTGAAAAATCAACAGATGGAAAACACCAGTCAAAAGGAAATGAAAAAAGG
ACTTCAGAAAATCCAGGCAAGACGAAGGACCACAAAGTGTGCCTTGCAGAAACAGACAGTCAGATTTCTG
CAGGTTCCAGTCAGAGTTCGAGCTGTAGAGATGAGAGTCAGCAGTCTCAAAACAAAGAGACAACACCGAA
AAAGCAACATAGAACTCGCAGAGGGAAGCAAGTGACCCCGAAGGTGCGCCCTGTTTATGATGGATACTGC
CCAAGCTGCCAGATGCCCTTCTCCTCATTGCTGGGTCAGACGCCCCAGTGGCATGTGTTTGAGTGTTTGG
ATTCTCCACCTATCTCTGACACAGAATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTA
TAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGAT
GCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGA
CTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATC
TCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAG
TGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACA
GCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTA
TTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTA
TTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATG
GTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAG
TGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCC
CAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTG
CTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCA
TCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGG
TCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGAT
CACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCAT
GCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAA
GTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGG
AAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAA
GAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCT
GTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAG
GACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGG
CAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGT
GCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCGGGACTGGCTTCACTGTGGATGCTT
TTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGG
GTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAGATAACAGGCAATCTGTTGAAGAAGAAGCTT
CGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGG
TTTTGCTGGATGCCAATCACTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCAT
ACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCAC
ACACTGTTCCTGGATACCACATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGT
TTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTG
CATCGGAAAGGAGAAAGTCTTCCTAGCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAA
AAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACT
CTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGGGTTTGCAGAGCCATTTGAAGAAGTGTGG
TGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACA
GCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGGGATTCCCTACAGTGAACACAGCAGCT
ACTTAGAAATGAAGCGTTTTGTCCAGTGGCTGAAGCCACAGAAAATCATCCCCACTGTCAATGTCGGCAG
CTTTCGGTCTAGGAACACGATGGAGAAATACTTTAAGGAGTGGAGACTGGAAGCCGGATACTGA

Translation (1047 aa):
MDSEFTKDWCCTHKNHLAMLEDTFWEEEIWEYKSKRKPKPVHPNNCSENISESVEKSTDGKHQSKGNEKR
TSENPGKTKDHKVCLAETDSQISAGSSQSSSCRDESQQSQNKETTPKKQHRTRRGKQVTPKVRPVYDGYC
PSCQMPFSSLLGQTPQWHVFECLDSPPISDTECPEGLLCTSTIPSHYKKYTHILLAQSRDSKEPLGSPSD
ALAGLFAAAAPGSPCNLEERRSMTLKTENLRKVSDHSLLMMQYLETSQPSAEINRKNVSSPCSQTSPVPQ
CAEFVKRDQLVGGGSPLAEVALNSQSKSGSMGLPLPENDTDSCEISYSPLHSDEETYDIDQELDDSQQEL
FFTQSSKDSSLEEDGSAIFENLHGPSPKEAEGIRPTAKSLVAQARCSAPSEGSTLSDSFLLLFYTSNRLS
QEDLPHTDAAFHLLSPALAVGGAASNYQTSKAKLDEPEKFLSLASSHQQQKIETSAVGNQTSLPLLTRAR
SKPLEKEGGKCLPLHPTQSQTRGSPRKGLGAPGANCACRNAQKRSSMPLDKPLGTSPSSPKCSPSQPSKK
VMKQMDIGVFFGLPPKRQETSLRESASEGPNVSPVVSPNQKRPRLCKRKAQSSLSDLEFDAKNLNESQHS
VGLSGEKRQHRRKRHKTSNSPREGPCQRRSGHLMNNPELGPVILSKGKAFVRRTRGRTQRGNMNISESSG
AGEVRRTCPFYKRIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYAGLSKDFTRPVYCSEITGNLLKKKL
RVQEQYIRQLPMDTECVVDSVKVVLLDANHCPGATMILFQLPNGAVILHTGDFRADPSMERSRLAGRKVH
TLFLDTTYCSPEYTFPSQQEVIQFAINTAFEAVTLNPRALVVCGTYCIGKEKVFLAIADVLGSKVGMSQE
KYKTLQCLNIPEVSSLITTDMCDSLVHLLPMMQINFKGLQSHLKKCGGKYDQILAFRPTGWTHSNNITST
ADIIPQTRGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGSFRSRNTMEKYFKEWRLEAGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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