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Report for CCDS43279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43279.1 Public Homo sapiens 4 TMEM192 24 110 108 CCDS HistoryNCBI Gene:201931Re-query CCDS DB by CCDS ID:43279.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306480.11 ENSP00000305069.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306480.11Link to Ensembl Protein Viewer:ENSP00000305069.4Re-query CCDS DB by Nucleotide ID:ENST00000306480Re-query CCDS DB by Protein ID:ENSP00000305069
Original member Current member NCBI NM_001100389.2 NP_001093859.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100389.2Link to Protein Sequence:NP_001093859.1Re-query CCDS DB by Nucleotide ID:NM_001100389Re-query CCDS DB by Protein ID:NP_001093859Link to BLAST:NP_001093859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093859.1 271 Q8IY95-1 271 100% 0 0

Chromosomal Locations for CCDS 43279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 165079658 165079796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165085586 165085688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165088468 165088602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165100628 165100892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165102950 165103096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165112747 165112773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCGGCGGGGGGCAGGATGGAGGACGGTTCCTTGGATATCACCCAGAGTATTGAAGACGACCCACTTC
TGGATGCCCAGCTTCTCCCACACCACTCATTACAAGCTCACTTTAGACCCCGATTCCATCCTCTTCCTAC
AGTCATCATAGTGAATCTTCTGTGGTTTATTCATCTCGTGTTTGTTGTTTTAGCATTTTTAACAGGTGTG
CTTTGTTCTTATCCTAATCCAAATGAGGACAAGTGCCCAGGAAATTACACAAACCCATTGAAAGTTCAGA
CGGTTATAATCCTTGGGAAAGTTATTTTGTGGATTCTCCATTTACTCCTTGAATGCTACATCCAGTATCA
CCACAGCAAAATCAGAAACCGAGGCTATAACTTGATCTACCGATCAACAAGGCATCTCAAGAGACTTGCG
TTGATGATACAGTCCTCTGGCAACACAGTGCTTCTCCTCATACTGTGCATGCAGCACTCCTTCCCAGAGC
CTGGCAGATTGTATCTTGACCTCATTCTGGCCATCTTGGCACTGGAACTCATCTGTTCCCTGATATGTCT
CCTCATTTACACAGTGAAAATCCGGAGATTTAATAAAGCTAAACCAGAGCCTGATATACTTGAAGAAGAA
AAAATCTATGCTTACCCCAGCAATATTACCTCGGAGACTGGATTCAGAACTATTTCAAGCCTAGAAGAAA
TTGTTGAAAAGCAAGGAGACACCATTGAATACCTGAAGCGACACAATGCGCTGCTGAGTAAGCGATTGTT
GGCTCTCACTTCCTCAGACCTGGGCTGTCAGCCAAGTAGAACGTGA

Translation (271 aa):
MAAGGRMEDGSLDITQSIEDDPLLDAQLLPHHSLQAHFRPRFHPLPTVIIVNLLWFIHLVFVVLAFLTGV
LCSYPNPNEDKCPGNYTNPLKVQTVIILGKVILWILHLLLECYIQYHHSKIRNRGYNLIYRSTRHLKRLA
LMIQSSGNTVLLLILCMQHSFPEPGRLYLDLILAILALELICSLICLLIYTVKIRRFNKAKPEPDILEEE
KIYAYPSNITSETGFRTISSLEEIVEKQGDTIEYLKRHNALLSKRLLALTSSDLGCQPSRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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