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Report for CCDS1469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1469.1 Public Homo sapiens 1 IL19 24 110 108 CCDS HistoryNCBI Gene:29949Re-query CCDS DB by CCDS ID:1469.1Re-query CCDS DB by GeneID:29949See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1469.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270218.10 ENSP00000270218.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000270218.10Link to Ensembl Protein Viewer:ENSP00000270218.6Re-query CCDS DB by Nucleotide ID:ENST00000270218Re-query CCDS DB by Protein ID:ENSP00000270218
Original member Current member EBI ENST00000340758.7 ENSP00000343000.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340758.7Link to Ensembl Protein Viewer:ENSP00000343000.3Re-query CCDS DB by Nucleotide ID:ENST00000340758Re-query CCDS DB by Protein ID:ENSP00000343000
Original member Current member EBI ENST00000659997.3 ENSP00000499459.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000659997.3Link to Ensembl Protein Viewer:ENSP00000499459.2Re-query CCDS DB by Nucleotide ID:ENST00000659997Re-query CCDS DB by Protein ID:ENSP00000499459
Original member Current member EBI ENST00000656872.2 ENSP00000499487.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000656872.2Link to Ensembl Protein Viewer:ENSP00000499487.2Re-query CCDS DB by Nucleotide ID:ENST00000656872Re-query CCDS DB by Protein ID:ENSP00000499487
Original member Current member NCBI NM_001369605.1 NP_001356534.1 Accepted alive Link to Nucleotide Sequence:NM_001369605.1Link to Protein Sequence:NP_001356534.1Re-query CCDS DB by Nucleotide ID:NM_001369605Re-query CCDS DB by Protein ID:NP_001356534Link to BLAST:NP_001356534.1
Original member Current member NCBI NM_001393490.1 NP_001380419.1 Accepted alive Link to Nucleotide Sequence:NM_001393490.1Link to Protein Sequence:NP_001380419.1Re-query CCDS DB by Nucleotide ID:NM_001393490Re-query CCDS DB by Protein ID:NP_001380419Link to BLAST:NP_001380419.1
Original member Current member NCBI NM_001393491.1 NP_001380420.1 Accepted alive Link to Nucleotide Sequence:NM_001393491.1Link to Protein Sequence:NP_001380420.1Re-query CCDS DB by Nucleotide ID:NM_001393491Re-query CCDS DB by Protein ID:NP_001380420Link to BLAST:NP_001380420.1
Original member Current member NCBI NM_013371.5 NP_037503.2 Accepted alive Link to Nucleotide Sequence:NM_013371.5Link to Protein Sequence:NP_037503.2Re-query CCDS DB by Nucleotide ID:NM_013371Re-query CCDS DB by Protein ID:NP_037503Link to BLAST:NP_037503.2
Original member Current member NCBI NM_153758.5 NP_715639.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153758.5Link to Protein Sequence:NP_715639.2Re-query CCDS DB by Nucleotide ID:NM_153758Re-query CCDS DB by Protein ID:NP_715639Link to BLAST:NP_715639.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356534.1 177 Q9UHD0-1 177 100% 0 0
NP_001380419.1 177 Q9UHD0-1 177 100% 0 0
NP_001380420.1 177 Q9UHD0-1 177 100% 0 0
NP_037503.2 177 Q9UHD0-1 177 100% 0 0
NP_715639.2 177 Q9UHD0-1 177 100% 0 0

Chromosomal Locations for CCDS 1469.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 206836663 206836806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206836958 206837023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206839850 206840002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206841004 206841078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206842527 206842622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGAAGTTACAGTGTGTTTCCCTTTGGCTCCTGGGTACAATACTGATATTGTGCTCAGTAGACAACCACG
GTCTCAGGAGATGTCTGATTTCCACAGACATGCACCATATAGAAGAGAGTTTCCAAGAAATCAAAAGAGC
CATCCAAGCTAAGGACACCTTCCCAAATGTCACTATCCTGTCCACATTGGAGACTCTGCAGATCATTAAG
CCCTTAGATGTGTGCTGCGTGACCAAGAACCTCCTGGCGTTCTACGTGGACAGGGTGTTCAAGGATCATC
AGGAGCCAAACCCCAAAATCTTGAGAAAAATCAGCAGCATTGCCAACTCTTTCCTCTACATGCAGAAAAC
TCTGCGGCAATGTCAGGAACAGAGGCAGTGTCACTGCAGGCAGGAAGCCACCAATGCCACCAGAGTCATC
CATGACAACTATGATCAGCTGGAGGTCCACGCTGCTGCCATTAAATCCCTGGGAGAGCTCGACGTCTTTC
TAGCCTGGATTAATAAGAATCATGAAGTAATGTTCTCAGCTTGA

Translation (177 aa):
MKLQCVSLWLLGTILILCSVDNHGLRRCLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIK
PLDVCCVTKNLLAFYVDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVI
HDNYDQLEVHAAAIKSLGELDVFLAWINKNHEVMFSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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