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Report for CCDS50070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50070.1 Public Mus musculus 17 Ring1 23 108 98 CCDS HistoryNCBI Gene:19763Re-query CCDS DB by CCDS ID:50070.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025183.8 ENSMUSP00000025183.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025183.8Link to Ensembl Protein Viewer:ENSMUSP00000025183.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025183Re-query CCDS DB by Protein ID:ENSMUSP00000025183
Original member Current member NCBI NM_009066.3 NP_033092.3 Accepted alive Link to Nucleotide Sequence:NM_009066.3Link to Protein Sequence:NP_033092.3Re-query CCDS DB by Nucleotide ID:NM_009066Re-query CCDS DB by Protein ID:NP_033092Link to BLAST:NP_033092.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033092.3 406 O35730-1 406 100% 0 0

Chromosomal Locations for CCDS 50070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34021382 34021483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34021683 34021956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34022296 34022685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34022979 34023194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34023293 34023453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34024289 34024366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGACGACGCCGGCGAATGCACAGAATGCCAGCAAAACGTGGGAACTGAGTCTCTATGAGCTGCACCGGA
CCCCGCAGGAAGCCATCATGGATGGTACAGAGATTGCGGTTTCGCCTCGGTCACTGCATTCTGAGCTCAT
GTGTCCCATCTGCCTGGACATGCTGAAGAACACAATGACCACCAAGGAGTGCCTGCATAGGTTCTGCTCG
GACTGCATCGTCACCGCCCTGCGGAGCGGGAACAAGGAGTGCCCTACCTGCCGGAAAAAGCTGGTATCCA
AGCGGTCCCTACGGCCGGACCCCAACTTCGACGCCCTGATCTCCAAAATCTACCCTAGCCGGGAGGAATA
CGAGGCCCATCAGGACCGGGTGCTCATCCGCCTCAGCCGCCTGCACAACCAGCAGGCGCTGAGCTCCAGT
ATCGAGGAAGGGCTCCGGATGCAGGCCATGCACAGGGCCCAGCGTGTGAGGCGGCCGATGCCTGGATCTG
ATCAGACCGCCACAATGAGTGGGGGGGAAGGAGAACCTGGGGAGGGAGAAGGGGATGGAGAGGATGTAAG
CTCTGACTCCGCCCCAGACTCTGCTCCAGGCCCTGCTCCCAAGCGACCCCGCGGAGCGGGTGCAGGGGCC
AGCAGTGTAGGGACAGGGGGTGGGGCTGCTGGTGGGGCTTGCGGGGGTGCCGGTTCTGAAGACTCTGGTG
ACCGGGGCGGCACCCTGGGAGGGGGAACCCTGGGGCCCCCAAGCCCTCCTGGGGCCCCCAGCCCTCCAGA
GCCCGGTGGAGAGATTGAGCTTGTGTTCCGGCCCCATCCCCTGCTTGTGGAGAAAGGAGAGTACTGCCAG
ACTCGGTACGTGAAGACTACTGGGAATGCCACAGTGGATCATCTCTCCAAGTACCTGGCCCTGCGCATTG
CCCTGGAGAGGAGGCAGCAGCAGGAAACCACAGAGCCCGGAGGGCCTGGTGGGGGTGCTTCGGACACAGG
CGGACCTGATGGGGGTGGTGGGGAGAGAGGCGTTGCCGGAGGAGGCGAAGGTCCTGAGGAGCCTGCGCTG
CCCAGCCTGGAAGGTGTCAGCGAAAAGCAGTACACCATCTACATCGCTCCTGGGGGCGGAGCGTTCACGA
CGCTGAATGGATCACTGACCTTGGAGCTTGTAAACGAGAAGTTCTGGAAGGTGTCCAGGCCCTTAGAGCT
CTGCTATGCCCCCACGAAGGACCCAAAATGA

Translation (406 aa):
MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCS
DCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSS
IEEGLRMQAMHRAQRVRRPMPGSDQTATMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGAGAGA
SSVGTGGGAAGGACGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ
TRYVKTTGNATVDHLSKYLALRIALERRQQQETTEPGGPGGGASDTGGPDGGGGERGVAGGGEGPEEPAL
PSLEGVSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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