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Report for CCDS49564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49564.1 Public Mus musculus 14 Gm9376 23 108 98 CCDS HistoryNCBI Gene:668814Re-query CCDS DB by CCDS ID:49564.1Re-query CCDS DB by GeneID:668814See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171107.2 ENSMUSP00000128952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171107.2Link to Ensembl Protein Viewer:ENSMUSP00000128952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171107Re-query CCDS DB by Protein ID:ENSMUSP00000128952
Original member Current member NCBI NM_001101609.1 NP_001095079.1 Accepted alive Link to Nucleotide Sequence:NM_001101609.1Link to Protein Sequence:NP_001095079.1Re-query CCDS DB by Nucleotide ID:NM_001101609Re-query CCDS DB by Protein ID:NP_001095079Link to BLAST:NP_001095079.1

Chromosomal Locations for CCDS 49564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 118267158 118267688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGAAGCCTGAGACTGGAGAGGACCCAGGTAAATTATGTACACATAGAAGATCTGACAACGGAAAACTGA
AGGAGGGAACTCAAGTGAGCAGCAGCCTCATGATGGAAGAAATTGACAGGATGATAGTTCAAATGCGCTT
AAAGGATAGCAAAACTGTATTAATTTCAAAGACGGAGTTGACCGATGTGCAGTTCCAGAAGCTAAGAAAG
CACTTCGAGACAGACTGTTACCCTAATGAGGAAACTCTGCAGGCCTTCGCTGAGGAACTCAAACTACAGA
AAGATGTCATCAGATCCTGGTTCATCACTCAGCGTCGAAGAATGATGAGGTACAGATGGTTTTTCACGAG
CTACTACAGGGATTGGAAAACGTCCTGTGAGTACTCTACAACAAGAAGATTCGACAGGCAGAAGAACTCC
AAGGAGTGCTCCCAGAATGACCCTGGACTCCCCGAAGAGTTGGAAGCCTTGAAGAGGCTCAAGCTCTCTT
CTGGGTACCAAAGCAGAGATGGCATGTCACAAGATTTCTGA

Translation (176 aa):
MKPETGEDPGKLCTHRRSDNGKLKEGTQVSSSLMMEEIDRMIVQMRLKDSKTVLISKTELTDVQFQKLRK
HFETDCYPNEETLQAFAEELKLQKDVIRSWFITQRRRMMRYRWFFTSYYRDWKTSCEYSTTRRFDRQKNS
KECSQNDPGLPEELEALKRLKLSSGYQSRDGMSQDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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