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Report for CCDS20257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20257.1 Public Mus musculus 6 Reg1 23 108 98 CCDS HistoryNCBI Gene:19692Re-query CCDS DB by CCDS ID:20257.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079926.5 ENSMUSP00000078847.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079926.5Link to Ensembl Protein Viewer:ENSMUSP00000078847.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079926Re-query CCDS DB by Protein ID:ENSMUSP00000078847
Original member Current member EBI ENSMUST00000204601.2 ENSMUSP00000144840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204601.2Link to Ensembl Protein Viewer:ENSMUSP00000144840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204601Re-query CCDS DB by Protein ID:ENSMUSP00000144840
Original member Current member EBI ENSMUST00000204687.2 ENSMUSP00000145161.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204687.2Link to Ensembl Protein Viewer:ENSMUSP00000145161.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204687Re-query CCDS DB by Protein ID:ENSMUSP00000145161
Original member Current member NCBI NM_009042.2 NP_033068.1 Accepted alive Link to Nucleotide Sequence:NM_009042.2Link to Protein Sequence:NP_033068.1Re-query CCDS DB by Nucleotide ID:NM_009042Re-query CCDS DB by Protein ID:NP_033068Link to BLAST:NP_033068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033068.1 165 P43137 165 100% 0 0

Chromosomal Locations for CCDS 20257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 78426331 78426391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78426913 78427031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78427325 78427462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78428114 78428225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78428399 78428466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGCTAGGAACGCCTACTTCATCCTGCTCTCATGCCTGATCGTCCTGTCTCCAAGCCAAGGCCAGGAAG
CTGAAGAAGACCTGCCATCTGCCAGGATCAGTTGCCCAGAAGGTTCCAATGCCTACAGCTCCTATTGTTA
CTACTTCACTGAAGACCGTTTAACTTGGGCTGATGCAGATCTTTTTTGCCAGAACATGAATTCAGGCTAC
CTGGTGTCAGTTCTCAGTCAGGCTGAGGGCAACTTTGTGGCCTCTCTGATTAAGGAGAGTGGCACTACAG
ACGCCAATGTCTGGACTGGACTCCATGATCCCAAAAGGAATCGTCGCTGGCACTGGAGCAGTGGGTCTCT
GTTTCTCTACAAATCCTGGGCAACTGGGTCTCCTAACAGTTCCAATCGTGGCTACTGTGTATCTCTGACT
TCAAACACAGGATACAAGAAATGGAAGGATGACAACTGTGATGCCCAATACTCATTTGTCTGCAAGTTCA
AAGGCTGA

Translation (165 aa):
MARNAYFILLSCLIVLSPSQGQEAEEDLPSARISCPEGSNAYSSYCYYFTEDRLTWADADLFCQNMNSGY
LVSVLSQAEGNFVASLIKESGTTDANVWTGLHDPKRNRRWHWSSGSLFLYKSWATGSPNSSNRGYCVSLT
SNTGYKKWKDDNCDAQYSFVCKFKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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