NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17035.1 Public Mus musculus 2 Rbpjl 23 108 98 CCDS HistoryNCBI Gene:19668Re-query CCDS DB by CCDS ID:17035.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017151.1 ENSMUSP00000017151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017151.1Link to Ensembl Protein Viewer:ENSMUSP00000017151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000017151Re-query CCDS DB by Protein ID:ENSMUSP00000017151
Original member Current member NCBI NM_009036.1 NP_033062.1 Accepted alive Link to Nucleotide Sequence:NM_009036.1Link to Protein Sequence:NP_033062.1Re-query CCDS DB by Nucleotide ID:NM_009036Re-query CCDS DB by Protein ID:NP_033062Link to BLAST:NP_033062.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033062.1 515 O08674 515 100% 0 0

Chromosomal Locations for CCDS 17035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164403297 164403318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164404459 164404561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164405754 164405879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164407732 164407802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164407985 164408100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164408368 164408542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164410260 164410397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164410780 164410889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164411019 164411171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164413852 164414007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164414176 164414279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164414370 164414643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGACCCCAGGGAGACAACAGACCCCTCGTTGCCCCCGGGCCCTTTGACTCACCTGAGCCTGCCGGACA
GCTCAGAGGTGCGGCTACAGAGCGACGGGCCCAGCCTCCTGGGGAGTTGGACCAGGTCACCCCCAGAGCA
TGCCATCATCCTAAGAGAAGGTGTGCGCACATGCCTGCAGCAAAGATGTGAGCAGACTGTGTGGATCCTG
CATGCCAAGGTGGCTCAGAAATCCTATGGAAATGAGAAGCGGTTCTTCTGTCCTCCACCCTGTGTCTACC
TCGCGGGTCCTGGCTGGAGGGTGAAGCCAATGCAAGACCAAGCCCTCCAATCTGCGGAGACCGGGCCCAC
CGTCTGCGGTTACATGGGACTGGACGGTGCGTCCGGCAGCGCTCCCGAGACCCAGAAGTTGAACTTTGAA
GAGCAGCCGGACTCCAGGGAATTTGGTTGTGCCAAGACCCTGTACATCTCGGACGCCGATAAGAGGAAGC
ACTTCCGGCTGGTGCTGCGACTGGTGCTGCGAGGGGGCCAGGAGCTGGGCACTTTCCACAGTCGCCTCAT
CAAGGTGATCTCCAAGCCCTCGCAGAAGAAGCAGTCGCTGAAAAACACAGACCTATGCATCTCCTCCGGC
TCAAAGGTCTCCCTTTTCAATCGCCTGCGCTCCCAGACAGTGTCCACGCGTTACCTCTCTGTGGAAGATG
GGGCCTTTGTGGCCAGCGCAAGGCAGTGGGCTGCCTTCACCCTCCACCTGGCTGATGGGCACTGTTCCCA
AGGGGACTTCCCACCCCAGGAAGGTTACATCCGCTACGGCTCCCTGGTGCAGCTTGTCTGCACTGTCACA
GGCATTACACTGCCGCCTATGATCATCCGAAAAGTGGCCAAGCAGTGTGCCCTCCTTGATGTGGATGAAC
CCATATCCCAGCTGCACAAGTGTGCCTTCCAGTTTCCAAGTGACACCCCAGGAGGGGCTGGCACCTACTT
ATGCCTTGCCACAGAGAAGGTGGTGCGATTCCAGGCTTCCCTCTGCCCCAAGGAGGCCAACAGGGCGCTG
CTCAACGACAGCTCTTGCTGGACCATCATTGGCACGGAGTCGGTGGAGTTCACCTTCAGCACCAGCCTGG
CCTGTACTCGGGAGCCCGTCACTCCGGTGCCTCTCATCAGCACTCTGGAGCTGAGCGGTGGAGGTGATGT
GGCCACGCTGGAGCTGCACGGAGAAAATTTCCACGCTGGGCTCAAGGTGTGGTTCGGAGACGTGGAGGCA
GAAACCATGTACAGGAGCCCTCGTTCCTTGGTGTGCGTAGTGCCAGACGTGGCGGCCTTCGGCAGCGACT
GGCGTTGGCTCCGCACCCCCATCACCGTGCCCGTGAGCTTGCTGCGCGCGGATGCGCTCTTCTACCCCAG
CCCCTTCTCTTTCACCTACACCCCGGAATACAGCGCGCTGCCACGGCTGCCCAACGCGCAAGAGCCTGCC
CCCGACGCGGACACGCTCCTGGAGAGCATCCACCACGAGTTCACACGCACCAACTTCCATCTCTTCTGCC
CCACCTAG

Translation (515 aa):
MDPRETTDPSLPPGPLTHLSLPDSSEVRLQSDGPSLLGSWTRSPPEHAIILREGVRTCLQQRCEQTVWIL
HAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPMQDQALQSAETGPTVCGYMGLDGASGSAPETQKLNFE
EQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSG
SKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGHCSQGDFPPQEGYIRYGSLVQLVCTVT
GITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPSDTPGGAGTYLCLATEKVVRFQASLCPKEANRAL
LNDSSCWTIIGTESVEFTFSTSLACTREPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEA
ETMYRSPRSLVCVVPDVAAFGSDWRWLRTPITVPVSLLRADALFYPSPFSFTYTPEYSALPRLPNAQEPA
PDADTLLESIHHEFTRTNFHLFCPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH