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Report for CCDS26929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26929.1 Public Mus musculus 14 Rbp3 23 108 98 CCDS HistoryNCBI Gene:19661Re-query CCDS DB by CCDS ID:26929.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035695.9 ENSMUSP00000040249.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035695.9Link to Ensembl Protein Viewer:ENSMUSP00000040249.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035695Re-query CCDS DB by Protein ID:ENSMUSP00000040249
Original member Current member NCBI NM_015745.3 NP_056560.1 Accepted alive Link to Nucleotide Sequence:NM_015745.3Link to Protein Sequence:NP_056560.1Re-query CCDS DB by Nucleotide ID:NM_015745Re-query CCDS DB by Protein ID:NP_056560Link to BLAST:NP_056560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056560.1 1234 P49194 1234 99.919% 0 1

Chromosomal Locations for CCDS 26929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 33954097 33957144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33958491 33958681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33960552 33960694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33962398 33962720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3705 nt):
ATGATGAGAGAATGGGTCCTGGTTTTGTCCACACTGCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCC
AGCCAAGCCTGGTACTGGATATGGCCAAGATCCTCCTGGATAACTACTGCTTCCCTGAGAACCTGATGGG
AATGCAAGCAGCCATTGAGCAGGCGATGAAGAGTCACGAGATTCTGGGCATCTCAGACCCTCAGACGCTG
GCCCAAGTGCTGACAGCTGGAGTCCAGAGTTCCTTGAGTGACCCACGACTCTTCATCTCTTACGAGCCCA
GTACCCTCGAGGCTCCCCAGCAAGCACCAGTGCTCACCAACCTCACCCGAGAAGAACTGCTGGCCCAGAT
ACAGAGGAACATCCGCCATGAGGTTCTTGAGGGCAACGTGGGCTACCTACGAGTGGACGACCTCCCTGGC
CAAGAGGTACTGAGCGAGCTGGGGGAGTTCTTAGTGAGCCATGTGTGGAGGCAGCTCATGAGCACCTCCT
CCTTGGTGCTAGATCTCCGGCACTGCTCTGGCGGCCACTTCTCTGGGATCCCTTATGTCATCTCTTACTT
GCACCCTGGGAACACGGTCATGCACGTGGACACCGTCTACGATCGGCCCTCCAACACCACCACAGAGATC
TGGACCTTGCCCGAGGTCCTCGGGGAGAGATACAGTGCTGACAAGGATGTGGTGGTCCTCACCAGCGGAC
ACACTGGGGGAGTCGCAGAGGACATTGCCTACATCCTGAAGCAGATGCGGCGCGCCATCGTGGTGGGCGA
GCGGACGGAGGGTGGGGCCCTGGACCTCCAGAAGCTGAGAATAGGCCAGTCCAACTTCTTCCTCACAGTG
CCTGTGTCCAGGTCCCTGGGACCTCTAGGTGGAGGTGGCCAGACATGGGAAGGCAGTGGCGTGCTGCCTT
GTGTGGGGACCCCTGCAGAGCAAGCCCTAGAAAAGGCCCTGGCCATCCTCACCCTGCGTCGTGCCCTGCC
AGGGGTTGTCCTCCGACTTCAGGAAGCCCTCCAGGACTATTACACATTAGTGGACCGAGTGCCGGGCCTG
CTGCACCACCTGGCCAGCATGGACTACTCAGCTGTGGTCTCTGAAGAGGACCTGGTGACAAAGCTCAATG
CTGGCTTGCAGGCTGTGTCGGAGGATCCCAGGCTCCTGGTGAGGGCCACCGGACCCAGAGACTCCTCCTC
AAGACCTGAGACTGGGCCTAATGAGTCCCCAGCAGCCACCCCCGAGGTGCCCACGGAAGAAGATGCCCGG
AGGGCCCTGGTGGACTCTGTGTTTCAGGTGTCCGTGCTGCCGGGCAATGTGGGCTACCTGCGCTTTGATA
GATTTGCAGACGCCGCTGTGCTGGAGACGCTGGGCCCTTACGTGCTGAAGCAGGTATGGGAGCCTTTGCA
GGACACGGAACACCTCATCATGGACCTGCGTCATAACCCTGGGGGTCCGTCCTCGGCGATGCCTCTGGTG
CTGTCCTACTTCCAGGGACCTGAGGCCGGACCTGTACGGCTCTTTACCACCTATGATCGCCGCACCAACA
TCACCCAGGAGCACTTCAGCCATCGGGAGTTGCTAGGCCAACGCTATGGTAACCAGCGTGGAGTGTACCT
GCTTACTAGCCACAGGACTGCCACAGCTGCCGAAGAGTTTGCCTTCCTCATGCAGTCCCTGGGCTGGGCC
ACACTGGTCGGCGAAATCACCGCGGGTAGCCTGCTCCACACCTGCACGGTGCCACTGCTGGACTCGCCCC
AGGGTGGCCTGGCGCTCACAGTACCGGTACTTACTTTTATTGACAACCACGGTGAGGCCTGGCTGGGGGG
TGGGGTGGTACCTGATGCCATCGTGCTGGCTGAGGAGGCCTTAGAGAGAGCTCAGGAGGTGCTGGACTTC
CATCGCAGTCTGGGCGCCTTGGTAGAGGGCACGGGTCGCCTGCTGGAGGCTCACTATGCCCGGCCAGAGA
TCGCACAGCGGGCCAGAGCTCTCCTGCAATCTAAGTTGGCCCAAGGAGCCTACCGCACAGCTGTGGACTT
GGAGTCACTGGCCTCACAGCTCACTGCTGACCTTCAGGAGGTATCTGAGGACCACCGCCTGCTGGTATTC
CATAGCCCTGGGGAGCTTGTGGCAGAGGAGGTCCCTCTACCGCCCCCTGCCGTTCCCTCCCCAGAGGAAC
TCTCCTATCTCATAGAGGCTCTGTTCAAAACGGATGTGCTACCCGGCCAGCTCGGCTACTTGCGTTTTGA
CGCCATGGCTGAGCTAGAGACAGTAAAGGCCATTGGGCCTCAGCTAGTACAGCTGGTGTGGCAGAGGCTG
GTGGACACAGCTGCGCTGATTGTTGACCTGCGCTACAACCCTGGCAGCTACTCTTCTGCCGTTCCTCTAC
TCTGCTCCTATTTTTTTGAGGCGGAGCCCCGCCAGCACCTCTACTCTGTTTTTGACAGGGCGACATCTAG
GGTCACAGAAATATGGACCCTGCCGCTGGTTGCTGGGCAACGCTATGGATCCCATAAGGACCTATACATC
CTCATGAGCCACACTAGTGGCTCTGCAGCCGAGGCCTTTGCTCACACTATGCAGGACCTACAGCGGGCCA
CCGTTATAGGAGAGCCCACAGCTGGAGGGGCACTCTCCGTGGGCATCTACCAGGTGGGCAACAGCCCCTT
ATATGCCTCCATGCCTACTCAGATGGCCCTGAGTGCCAGCACCGGTGAGGCCTGGGACTTGGCTGGTGTG
GAACCTGACATCACTGTGCCCATGAGTGAGGCCCTTTCCACAGCCCAGGACATAGTGGTCCTGCGTGCTA
AGGTGCCCACTGTTCTGCAGACAGCTGGGAAACTAGTGGCTGATAACTATGCATCCCCTGAATTGGGGGC
CAAGATGGCTGCCAAGCTAAGCGGTCTGCAGAGCCGCTATGCAAGGGTGACTTCAGAAGGGGCCTTGGCT
GAGATGCTGGGGGCAGATCTGCAAATACTCTCTGGGGACCCACACCTGAAGACAGCACACATTCCAGAGG
ATGCCAAAGACCGAATTCCTGGAATCGTGCCTATGCAGATTCCCTCCCCAGAAGTCTTTGAAGACCTGAT
CAAGTTTTCCTTCCACACAAATGTCCTTGAGGACAACATTGGCTACTTGAGATTCGACATGTTCGGGGAC
TGCGAGCTGCTTACCCAGGTCTCCGAGCTGCTGGTAGAACACATCTGGAAGAAGATTGTACACACTGATG
CCCTGATCATCGACATGAGGTTCAACCTTGGCGGCCCCACCTCCTCCATCTCAGCCTTGTGCTCTTACTT
CTTTGACGAGGCACCTCCCATTCTGCTGGACAAGATCTACAACCGGCCCAATGACTCGGTCAGCGAACTT
TGGACCCACACTCAGCTCACAGGTGAACGATATGGCTCCAAGAAGAGCGTAGCCATCCTGACCAGTGGTG
TGACAGCCGGTGCCGCCGAGGAATTTACTTACATCATGAAGAGGCTGGGCCGGGCCCTGGTCATCGGTGA
AGTGACAAGTGGAGGTTGCCAACCACCGCAGACCTACCACGTGGATGACACCCATCTCTACATCACCATC
CCTACAGCTCGCTCTGTGGGCGCTGAAGACGGAAGTTCCTGGGAAGGGGTGGGCGTGACACCTAATGTAG
TTGTCTCTTCAGAATTGGCCCTTACCAGAGCCAAGGAGATACTCCAGCAGGCCCTGAGGGGGTAA

Translation (1234 aa):
MMREWVLVLSTLLWVPAGPTHLFQPSLVLDMAKILLDNYCFPENLMGMQAAIEQAMKSHEILGISDPQTL
AQVLTAGVQSSLSDPRLFISYEPSTLEAPQQAPVLTNLTREELLAQIQRNIRHEVLEGNVGYLRVDDLPG
QEVLSELGEFLVSHVWRQLMSTSSLVLDLRHCSGGHFSGIPYVISYLHPGNTVMHVDTVYDRPSNTTTEI
WTLPEVLGERYSADKDVVVLTSGHTGGVAEDIAYILKQMRRAIVVGERTEGGALDLQKLRIGQSNFFLTV
PVSRSLGPLGGGGQTWEGSGVLPCVGTPAEQALEKALAILTLRRALPGVVLRLQEALQDYYTLVDRVPGL
LHHLASMDYSAVVSEEDLVTKLNAGLQAVSEDPRLLVRATGPRDSSSRPETGPNESPAATPEVPTEEDAR
RALVDSVFQVSVLPGNVGYLRFDRFADAAVLETLGPYVLKQVWEPLQDTEHLIMDLRHNPGGPSSAMPLV
LSYFQGPEAGPVRLFTTYDRRTNITQEHFSHRELLGQRYGNQRGVYLLTSHRTATAAEEFAFLMQSLGWA
TLVGEITAGSLLHTCTVPLLDSPQGGLALTVPVLTFIDNHGEAWLGGGVVPDAIVLAEEALERAQEVLDF
HRSLGALVEGTGRLLEAHYARPEIAQRARALLQSKLAQGAYRTAVDLESLASQLTADLQEVSEDHRLLVF
HSPGELVAEEVPLPPPAVPSPEELSYLIEALFKTDVLPGQLGYLRFDAMAELETVKAIGPQLVQLVWQRL
VDTAALIVDLRYNPGSYSSAVPLLCSYFFEAEPRQHLYSVFDRATSRVTEIWTLPLVAGQRYGSHKDLYI
LMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGNSPLYASMPTQMALSASTGEAWDLAGV
EPDITVPMSEALSTAQDIVVLRAKVPTVLQTAGKLVADNYASPELGAKMAAKLSGLQSRYARVTSEGALA
EMLGADLQILSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEDNIGYLRFDMFGD
CELLTQVSELLVEHIWKKIVHTDALIIDMRFNLGGPTSSISALCSYFFDEAPPILLDKIYNRPNDSVSEL
WTHTQLTGERYGSKKSVAILTSGVTAGAAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTHLYITI
PTARSVGAEDGSSWEGVGVTPNVVVSSELALTRAKEILQQALRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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