NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23425.1 Public Mus musculus 9 Rbp2 23 108 98 CCDS HistoryNCBI Gene:19660Re-query CCDS DB by CCDS ID:23425.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035029.2 ENSMUSP00000035029.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035029.2Link to Ensembl Protein Viewer:ENSMUSP00000035029.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035029Re-query CCDS DB by Protein ID:ENSMUSP00000035029
Original member Current member EBI ENSMUST00000187905.6 ENSMUSP00000140630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187905.6Link to Ensembl Protein Viewer:ENSMUSP00000140630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187905Re-query CCDS DB by Protein ID:ENSMUSP00000140630
Original member Current member EBI ENSMUST00000189446.6 ENSMUSP00000140676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189446.6Link to Ensembl Protein Viewer:ENSMUSP00000140676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189446Re-query CCDS DB by Protein ID:ENSMUSP00000140676
Original member Current member NCBI NM_009034.4 NP_033060.3 Accepted alive Link to Nucleotide Sequence:NM_009034.4Link to Protein Sequence:NP_033060.3Re-query CCDS DB by Nucleotide ID:NM_009034Re-query CCDS DB by Protein ID:NP_033060Link to BLAST:NP_033060.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033060.3 134 Q08652 134 100% 0 0

Chromosomal Locations for CCDS 23425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98490610 98490682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98498716 98498894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98507789 98507890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98509527 98509577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGACGAAGGACCAAAATGGAACCTGGGAAATGGAGAGTAATGAGAACTTTGAAGGCTACATGAAGGCCC
TAGATATTGATTTTGCCACCCGCAAGATCGCAGTGCGTCTGACTCAGACGAAGATCATCACTCAAGACGG
TGATAACTTCAAGACGAAAACCAACAGCACGTTCCGCAACTACGACCTGGATTTCACCGTCGGGGTGGAG
TTTGACGAACACACAAAGGGCCTGGACGGCCGACATGTCAAGACCCTGGTCACCTGGGAAGGCAACACCC
TCGTGTGTGTGCAGAAAGGGGAGAAGGAGAACCGTGGCTGGAAGCAGTGGGTGGAGGGAGACAAGCTGTA
CCTGGAGCTGACCTGCGGCGACCAGGTGTGCCGACAAGTGTTCAAAAAGAAGTGA

Translation (134 aa):
MTKDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKIITQDGDNFKTKTNSTFRNYDLDFTVGVE
FDEHTKGLDGRHVKTLVTWEGNTLVCVQKGEKENRGWKQWVEGDKLYLELTCGDQVCRQVFKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH